Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060286.seq
         (677 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g24890.1 68417.m03562 calcineurin-like phosphoesterase family...    29   2.1  
At5g01480.1 68418.m00061 DC1 domain-containing protein contains ...    29   2.8  
At2g35980.1 68415.m04416 harpin-induced family protein (YLS9) / ...    29   2.8  
At2g44430.1 68415.m05525 DNA-binding bromodomain-containing prot...    29   3.7  
At1g48120.1 68414.m05370 calcineurin-like phosphoesterase family...    29   3.7  
At2g21850.1 68415.m02596 DC1 domain-containing protein contains ...    28   4.9  
At1g64830.1 68414.m07350 aspartyl protease family protein contai...    28   4.9  
At5g23930.1 68418.m02810 mitochondrial transcription termination...    28   6.5  
At5g19230.1 68418.m02290 expressed protein                             28   6.5  
At1g44050.1 68414.m05082 DC1 domain-containing protein contains ...    28   6.5  
At1g55840.1 68414.m06404 SEC14 cytosolic factor (SEC14) / phosph...    27   8.6  

>At4g24890.1 68417.m03562 calcineurin-like phosphoesterase family
           protein contains Pfam profile: PF00149 calcineurin-like
           phosphoesterase
          Length = 615

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = -1

Query: 323 FLTLRLKNPLHPSQDEAP*CLPVPCPRRWHNAGIW--SWNWLRLPRYCSSPAAYHYCNN 153
           ++ L + NP  P+ D+    + V  P ++ +   W  S    + P  CSSP  Y YCN+
Sbjct: 66  WVNLAISNP-KPTSDD---WIGVFSPAKFDSGNCWPTSGGKEKTPYICSSPIKYMYCNS 120


>At5g01480.1 68418.m00061 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 413

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +3

Query: 363 SRQRQKEPMQIL*IKEV-LQSRHEKRSCSKRKGQDQL 470
           S    K P+Q+L I ++ L+   +KR CS ++G D L
Sbjct: 111 SSDHPKHPLQLLWIPDMSLEEERDKRCCSCKRGVDAL 147


>At2g35980.1 68415.m04416 harpin-induced family protein (YLS9) /
           HIN1 family protein / harpin-responsive family protein
           similar to harpin-induced protein hin1 ( GI:1619321)
           [Nicotiana tabacum]; identical to cDNA YLS9 mRNA for
           hin1 homolog GI:13122295
          Length = 227

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -2

Query: 259 PSPVPADGTMLGYGRGTGCACLATARLQLHITIVTML 149
           P P P      G+GRG GC CL +  +++ I+++ +L
Sbjct: 17  PPPAPKGYYRRGHGRGCGC-CLLSLFVKVIISLIVIL 52


>At2g44430.1 68415.m05525 DNA-binding bromodomain-containing protein
           contains Pfam domains, Pfam PF00439: Bromodomain and
           PF00249: Myb-like DNA-binding domain
          Length = 646

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = +3

Query: 111 NAETSSYNIRRLRNIVTIVICSWRRAVARQAQP 209
           +AETS  ++ R ++   +V+C  RR+V+ +A P
Sbjct: 430 DAETSDSSLSRQKSSGPLVVCKKRRSVSAKASP 462


>At1g48120.1 68414.m05370 calcineurin-like phosphoesterase family
           protein contains Pfam profile: PF00149 calcineurin-like
           phosphoesterase
          Length = 1338

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 16/54 (29%), Positives = 25/54 (46%)
 Frame = +3

Query: 402 IKEVLQSRHEKRSCSKRKGQDQLQATVLRRTDAGQRLSVVSLLNAELLSRKVID 563
           +   L  + E+    KR  + Q   TVL   D  + L + SL +   + R+VID
Sbjct: 778 VSSFLSDKQERNRKRKRTQKKQTDNTVLDTEDRSESLPLGSLKDLSKVKRRVID 831


>At2g21850.1 68415.m02596 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 772

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 7/65 (10%)
 Frame = +1

Query: 229 ALCHLRGQG-TGKHYGASSCD-----GC-KGFFRRSVRKNHLYTCRFSRNCVVDKDKRNQ 387
           +LCH+ G+   G  +G   CD      C   F R  + K+H +   +     +   + +Q
Sbjct: 196 SLCHICGESIAGVPFGCLECDFDAHLRCLDSFLRGLMHKSHPHRLIYRTKSHISFTENDQ 255

Query: 388 CRYCR 402
           C+ CR
Sbjct: 256 CQICR 260


>At1g64830.1 68414.m07350 aspartyl protease family protein contains
           Pfam domain, PF00026: eukaryotic aspartyl protease
          Length = 431

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/29 (44%), Positives = 21/29 (72%)
 Frame = +3

Query: 72  LLTRAEPQSPYHRNAETSSYNIRRLRNIV 158
           L+ R  P+SP++ +AETSS   +R+RN +
Sbjct: 30  LIHRDSPKSPFYNSAETSS---QRMRNAI 55


>At5g23930.1 68418.m02810 mitochondrial transcription termination
           factor-related / mTERF-related contains Pfam profile
           PF02536: mTERF
          Length = 457

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = +3

Query: 402 IKEVLQSRHEKRSCSKRKGQDQ-LQATVLRRTDAGQRLSVVSLLN 533
           +KE+LQ +    S SKRK  ++    +VLR+    QRL +  L++
Sbjct: 166 VKEILQDQDSSSSSSKRKQTNRNRNVSVLRKLGVPQRLLLNLLIS 210


>At5g19230.1 68418.m02290 expressed protein
          Length = 189

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
 Frame = +3

Query: 387 MQIL*IKEVLQSRHEKRSCSKRKGQDQLQATVLRRTDAGQRLSVVSLL-NAELLSRKVID 563
           + +L +  V  S H +   S   G+D L  TV  +   G  L  ++   NAE L+ +V+D
Sbjct: 6   LHLLCLLSVFLSLH-RLVLSGTDGEDDLLLTVFNKYRTGLNLKTLTKNENAECLADEVVD 64

Query: 564 ETVNVSDAEINN 599
           +  N      NN
Sbjct: 65  QLKNQPCTNTNN 76


>At1g44050.1 68414.m05082 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 530

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 235 CHLRGQGTGKHYGASSCDGCKGFFRRS 315
           C +  Q    +YGA SC+ C G+F  S
Sbjct: 160 CGVCHQQVDNNYGAYSCNNCDGYFVHS 186


>At1g55840.1 68414.m06404 SEC14 cytosolic factor (SEC14) /
           phosphoglyceride transfer protein similar to
           polyphosphoinositide binding protein SEC14 homolog Ssh1p
           (GB:AAB94598) [Glycine max]; identified in Eur J Biochem
           1998 Dec 1;258(2):402-10 as AtSEC14, characterized by
           functional complementation in S. cerevisiae.
          Length = 325

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = +1

Query: 214 HDHIPALCHLRGQGTGKHYGASSCDGC 294
           ++ +P  C   G G+G+H    + D C
Sbjct: 235 YESLPHFCRREGSGSGRHISNGTVDNC 261


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,015,482
Number of Sequences: 28952
Number of extensions: 300764
Number of successful extensions: 933
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 933
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)