Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060285.seq
         (674 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces ...    25   10.0 
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc...    25   10.0 

>SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = +3

Query: 351 TNSQRDPQWCCEISQCTCAIRSCTQTRESAYPRS 452
           T S + P    E+++  C  R C  T+    PR+
Sbjct: 317 TTSSKGPTRLYEVARFNCTTRGCEYTQNIPCPRA 350


>SPBC685.09 |orc2|orp2|origin recognition complex subunit
           Orc2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 545 LISTRGEFTRDRVASMRGQKLVNCXHLLG 631
           +I  +G +T+DR A  R  ++    HLLG
Sbjct: 70  IIKAKGAYTKDRSAKRRRGRIEIERHLLG 98


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,452,340
Number of Sequences: 5004
Number of extensions: 44841
Number of successful extensions: 106
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)