Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060285.seq
         (674 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0296 + 17393706-17394052,17394278-17394388,17395507-17395687     30   1.9  
04_03_0265 - 13638816-13641348,13641432-13641490                       29   2.6  
02_04_0197 - 20842893-20843492,20843562-20843912                       29   3.4  
05_05_0190 - 23110152-23112137                                         29   4.5  
01_05_0633 + 23840427-23840562,23840699-23840768,23840846-238409...    28   5.9  

>02_03_0296 + 17393706-17394052,17394278-17394388,17395507-17395687
          Length = 212

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 17/51 (33%), Positives = 30/51 (58%)
 Frame = +2

Query: 401 LCDSVVYPNARKRVSSQRCNSRRRLVHTSKQLPLNL*RSSVAGREWCALIS 553
           L ++V+  ++ +R+     ++RRRL HTS+ +P  L RS    +   A+IS
Sbjct: 142 LLEAVLDVSSTRRLQRFNAHARRRLKHTSRCMPARL-RSQAFHQSHMAIIS 191


>04_03_0265 - 13638816-13641348,13641432-13641490
          Length = 863

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = +1

Query: 106 SLWCSPLTTPRCSDIRSHWIATLXFTDYSVSVI*NNILS 222
           +L CSPLT   C ++RSH +  L  TD S   + + IL+
Sbjct: 382 NLGCSPLTPISCQEMRSHQL--LALTDVSYFDVSHTILN 418


>02_04_0197 - 20842893-20843492,20843562-20843912
          Length = 316

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = -2

Query: 604 LLASHGSDAITRELATCRDERAPLAPSNRGASQVQRQLLA-RVHETTTTVASLRGY 440
           L +SH S  +TR ++ CR +   +   NR   + + + LA R+ ET    A   G+
Sbjct: 109 LRSSHLSFEVTRAMSACRRDAMAIREENRVLVETRAEALALRLAETIPPDAKFTGF 164


>05_05_0190 - 23110152-23112137
          Length = 661

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = +3

Query: 60  VVHQFESRTRDSLTVIALVFAANYTAVLRHSLTLDCNSIXHGLQ 191
           VV  +E+  RD L  +  VFA  Y+A LR  +T  CN++   ++
Sbjct: 366 VVDMYEA-VRDLLPDLDPVFADPYSAALRAEVTAVCNTLGSSIK 408


>01_05_0633 +
           23840427-23840562,23840699-23840768,23840846-23840951,
           23841086-23841184,23841320-23841442,23841555-23842691
          Length = 556

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -1

Query: 176 NRVAIQCERMSEHRGVVS-GEHQSDHCERVSRSRLELV 66
           ++ +IQ       R VVS  E  +D CER SRSRL L+
Sbjct: 509 SKSSIQQNTTPVERIVVSDSEDSADECERPSRSRLSLM 546


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,774,715
Number of Sequences: 37544
Number of extensions: 313931
Number of successful extensions: 883
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 883
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)