Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060285.seq
         (674 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11351| Best HMM Match : LRV (HMM E-Value=6)                         31   1.1  
SB_44231| Best HMM Match : Ion_trans_2 (HMM E-Value=6.5e-09)           29   4.5  
SB_7678| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.0  
SB_12462| Best HMM Match : Kinesin (HMM E-Value=0)                     28   6.0  
SB_7579| Best HMM Match : HEAT (HMM E-Value=0.0096)                    28   6.0  

>SB_11351| Best HMM Match : LRV (HMM E-Value=6)
          Length = 194

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 28/98 (28%), Positives = 42/98 (42%), Gaps = 6/98 (6%)
 Frame = +1

Query: 397 APVRFGRVPKREKARILAAMQQSSSSRAHEQAAAAELVTLLGCWAR---VVRAHLDTWRV 567
           +PV  GR  +R  AR     + + +S  H+   A  LV+L+G + R   +  A   T  V
Sbjct: 79  SPVARGRASRRACARAPTMPRFALASPTHQPRKATLLVSLIGIYTRRRELAAAFTRTPAV 138

Query: 568 HA*SRRFHA---RPEARELXPPTRQPNSGLAPLKPRAP 672
           +  +   HA      A  + PP R P +     K R P
Sbjct: 139 NQRATDPHATGPHVAADGVTPPARPPLAAAQQTKDRVP 176


>SB_44231| Best HMM Match : Ion_trans_2 (HMM E-Value=6.5e-09)
          Length = 441

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 3/89 (3%)
 Frame = +2

Query: 326 LYQTWVKIYQFSKGSSMVL*N--ITMHLCDSVVYPNARKRVSSQ-RCNSRRRLVHTSKQL 496
           L+    K++Q +  SS+++    I + LC  V+Y  +RK+ S   RC  R  +   ++ L
Sbjct: 231 LFDPSSKLFQNALFSSLIMLAVLIVLGLCWEVIYRKSRKKRSDHGRCGDREHM-EGARLL 289

Query: 497 PLNL*RSSVAGREWCALISTRGEFTRDRV 583
           PL +  SS+   +   L   R  F R  +
Sbjct: 290 PLPVSASSLVPEDGLKL---RKHFNRTEI 315


>SB_7678| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1432

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 23/72 (31%), Positives = 38/72 (52%)
 Frame = -2

Query: 664  GVLVGQAQS*AAE*VXTVHELLASHGSDAITRELATCRDERAPLAPSNRGASQVQRQLLA 485
            G++VG+A   AA+   T ++L   H S+A+T  +     +RA ++ S R  S      ++
Sbjct: 1321 GMIVGRA---AADNTNTDNDLCDIHNSNAVTAIIDQAYYDRASISVSGRFPSH-DESFMS 1376

Query: 484  RVHETTTTVASL 449
             V ET T + SL
Sbjct: 1377 DV-ETATAIDSL 1387


>SB_12462| Best HMM Match : Kinesin (HMM E-Value=0)
          Length = 803

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = -2

Query: 547 ERAPLAPSNRGASQVQRQLL 488
           ++A + PS+RG SQ+QR LL
Sbjct: 779 KKADIVPSSRGLSQIQRNLL 798


>SB_7579| Best HMM Match : HEAT (HMM E-Value=0.0096)
          Length = 1276

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/35 (45%), Positives = 24/35 (68%)
 Frame = +1

Query: 415 RVPKREKARILAAMQQSSSSRAHEQAAAAELVTLL 519
           R P RE+A +LAA+   SSS+  ++A++ EL  LL
Sbjct: 528 RGPSREEA-LLAAISTPSSSKEDKEASSHELKVLL 561


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,452,815
Number of Sequences: 59808
Number of extensions: 356141
Number of successful extensions: 978
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 931
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 978
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)