Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060285.seq
         (674 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M93690-2|AAA29363.1| 1212|Anopheles gambiae unknown protein.           29   0.10 
AY957503-1|AAY41942.1|  596|Anopheles gambiae vasa-like protein ...    23   6.7  
AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcript...    23   6.7  

>M93690-2|AAA29363.1| 1212|Anopheles gambiae unknown protein.
          Length = 1212

 Score = 29.5 bits (63), Expect = 0.10
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = +1

Query: 355 ILKGILNGVVKYHNAPVRFGRVPKREKARILAAMQQSSSSR 477
           +L  +   V++Y  AP+  G V KRE  R+L  +Q+ S+ R
Sbjct: 845 LLASVAESVIRYA-APIWHGEVTKRECRRLLERVQRVSARR 884


>AY957503-1|AAY41942.1|  596|Anopheles gambiae vasa-like protein
           protein.
          Length = 596

 Score = 23.4 bits (48), Expect = 6.7
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 164 IQCERMSEHRGVVSGEHQSDHCERVSRSRL 75
           I  ++  E +  VSGE+  DH E   RS L
Sbjct: 152 INFDKFEEIQVRVSGENPPDHVESFERSGL 181


>AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1099

 Score = 23.4 bits (48), Expect = 6.7
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = +1

Query: 364 GILNGVVKYHNAPVRFGRVPKREKARILAAM--QQSSSSRAHEQAAAAELVT 513
           G++  VV+     + FGR  +R+K  +L A    +++ + A  QA A  L T
Sbjct: 538 GLIQRVVEAGQRAMSFGRANRRDKRFLLVAALDVRNAFNTASWQAIATALRT 589



 Score = 23.4 bits (48), Expect = 6.7
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +1

Query: 355 ILKGILNGVVKYHNAPVRFGRVPKREKARILAAMQQSSSSR 477
           +L  +   V++Y  APV    + KRE  R+L  +Q+  + R
Sbjct: 778 LLASVSESVMRYA-APVWSKELQKREPGRLLERVQRKMALR 817


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 638,025
Number of Sequences: 2352
Number of extensions: 12090
Number of successful extensions: 30
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 67741110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)