Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060285.seq
         (674 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82071-5|CAB04919.2|  514|Caenorhabditis elegans Hypothetical pr...    38   0.007
Z82071-3|CAH04734.1|  336|Caenorhabditis elegans Hypothetical pr...    38   0.007
AY204181-1|AAO39185.1|  336|Caenorhabditis elegans nuclear recep...    38   0.007
AY204180-1|AAO39184.1|  514|Caenorhabditis elegans nuclear recep...    38   0.007
AL110478-13|CAC14397.1|  514|Caenorhabditis elegans Hypothetical...    38   0.007
AF098997-2|AAC68722.2|  796|Caenorhabditis elegans Hypothetical ...    31   0.57 
Z79603-2|CAB01893.4|  500|Caenorhabditis elegans Hypothetical pr...    29   3.0  

>Z82071-5|CAB04919.2|  514|Caenorhabditis elegans Hypothetical
           protein W05B5.3a protein.
          Length = 514

 Score = 37.9 bits (84), Expect = 0.007
 Identities = 17/31 (54%), Positives = 22/31 (70%)
 Frame = +1

Query: 403 VRFGRVPKREKARILAAMQQSSSSRAHEQAA 495
           VRFGRVPKREKAR+   MQ+++     +Q A
Sbjct: 184 VRFGRVPKREKARMFEEMQKTNVQSQRDQIA 214


>Z82071-3|CAH04734.1|  336|Caenorhabditis elegans Hypothetical
           protein W05B5.3b protein.
          Length = 336

 Score = 37.9 bits (84), Expect = 0.007
 Identities = 17/31 (54%), Positives = 22/31 (70%)
 Frame = +1

Query: 403 VRFGRVPKREKARILAAMQQSSSSRAHEQAA 495
           VRFGRVPKREKAR+   MQ+++     +Q A
Sbjct: 6   VRFGRVPKREKARMFEEMQKTNVQSQRDQIA 36


>AY204181-1|AAO39185.1|  336|Caenorhabditis elegans nuclear receptor
           NHR-85 protein.
          Length = 336

 Score = 37.9 bits (84), Expect = 0.007
 Identities = 17/31 (54%), Positives = 22/31 (70%)
 Frame = +1

Query: 403 VRFGRVPKREKARILAAMQQSSSSRAHEQAA 495
           VRFGRVPKREKAR+   MQ+++     +Q A
Sbjct: 6   VRFGRVPKREKARMFEEMQKTNVQSQRDQIA 36


>AY204180-1|AAO39184.1|  514|Caenorhabditis elegans nuclear receptor
           NHR-85 protein.
          Length = 514

 Score = 37.9 bits (84), Expect = 0.007
 Identities = 17/31 (54%), Positives = 22/31 (70%)
 Frame = +1

Query: 403 VRFGRVPKREKARILAAMQQSSSSRAHEQAA 495
           VRFGRVPKREKAR+   MQ+++     +Q A
Sbjct: 184 VRFGRVPKREKARMFEEMQKTNVQSQRDQIA 214


>AL110478-13|CAC14397.1|  514|Caenorhabditis elegans Hypothetical
           protein W05B5.3a protein.
          Length = 514

 Score = 37.9 bits (84), Expect = 0.007
 Identities = 17/31 (54%), Positives = 22/31 (70%)
 Frame = +1

Query: 403 VRFGRVPKREKARILAAMQQSSSSRAHEQAA 495
           VRFGRVPKREKAR+   MQ+++     +Q A
Sbjct: 184 VRFGRVPKREKARMFEEMQKTNVQSQRDQIA 214


>AF098997-2|AAC68722.2|  796|Caenorhabditis elegans Hypothetical
           protein T10D4.6 protein.
          Length = 796

 Score = 31.5 bits (68), Expect = 0.57
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = +2

Query: 392 TMHLCDSVVYPNARKRVSSQRCNSRRRLVHTSKQLP 499
           +MH CDS   P +  RVS +R  S R L  T    P
Sbjct: 533 SMHACDSPATPESENRVSEERSESSRSLPPTVAVCP 568


>Z79603-2|CAB01893.4|  500|Caenorhabditis elegans Hypothetical
           protein M163.2 protein.
          Length = 500

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
 Frame = +3

Query: 300 NLIFISNHNYTKHG*RFTNSQRDPQWCCEISQCTCAIRSCTQTR---ESAYPRSDATVVV 470
           N  F +  + +KH  R T+S   P +CC+   C CA    +  R   +S +P   A  + 
Sbjct: 327 NKSFTNASDRSKHSKR-THSNEKP-YCCDFGSCACAYTDPSSLRKHVKSKHPEHHAMKMA 384

Query: 471 VSCTRASSCR 500
           +  T+  S +
Sbjct: 385 MRKTQRKSIK 394


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,898,369
Number of Sequences: 27780
Number of extensions: 259325
Number of successful extensions: 610
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 610
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)