Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060285.seq
         (674 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    71   8e-15
AB264336-1|BAF44091.1|   21|Apis mellifera ecdysone-induced prot...    44   2e-06
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   2.0  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     23   2.0  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   4.7  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    22   6.1  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    22   6.1  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 71.3 bits (167), Expect = 8e-15
 Identities = 38/52 (73%), Positives = 41/52 (78%)
 Frame = +1

Query: 403 VRFGRVPKREKARILAAMQQSSSSRAHEQAAAAELVTLLGCWARVVRAHLDT 558
           VRFGRVPKREKARILAAMQQSS SR+ E+A AAEL       A VV+AHLDT
Sbjct: 138 VRFGRVPKREKARILAAMQQSSHSRSQEKAVAAELEDEQRLLATVVQAHLDT 189


>AB264336-1|BAF44091.1|   21|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 21

 Score = 43.6 bits (98), Expect = 2e-06
 Identities = 18/21 (85%), Positives = 20/21 (95%)
 Frame = +1

Query: 337 MGEDLPILKGILNGVVKYHNA 399
           MG++LPILKGILNGVV YHNA
Sbjct: 1   MGDELPILKGILNGVVNYHNA 21


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 5/29 (17%)
 Frame = +1

Query: 343 EDLPILKGILNGVVK-----YHNAPVRFG 414
           EDLP +K I   V+K     + + P RFG
Sbjct: 350 EDLPFIKDIYETVIKLEGASFRSKPYRFG 378


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 5/29 (17%)
 Frame = +1

Query: 343 EDLPILKGILNGVVK-----YHNAPVRFG 414
           EDLP +K I   V+K     + + P RFG
Sbjct: 56  EDLPFIKDIYETVIKLEGASFRSKPYRFG 84


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = +1

Query: 82  ERETLSQ*SLWCSPLTTPRCSDIRSHWIATLXFTD 186
           E+  LS  +   SP+T+ + + +R+H  +T   T+
Sbjct: 319 EKPVLSSSTTTTSPMTSTKSTIVRNHLNSTCSVTN 353


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -3

Query: 279 NGNCNSXYIIEALGKMSHVT*DIVLNHTNTV 187
           +GNC    I+  +     +T + +L+H NTV
Sbjct: 243 SGNCKLNDILLTVRPHLELTFENILSHINTV 273


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -3

Query: 279 NGNCNSXYIIEALGKMSHVT*DIVLNHTNTV 187
           +GNC    I+  +     +T + +L+H NTV
Sbjct: 243 SGNCKLNDILLTVRPHLELTFENILSHINTV 273


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,158
Number of Sequences: 438
Number of extensions: 3126
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)