Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060284.seq
         (400 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    23   0.84 
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        21   3.4  
AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory recept...    21   4.5  
AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory recept...    21   4.5  

>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 23.4 bits (48), Expect = 0.84
 Identities = 10/35 (28%), Positives = 15/35 (42%)
 Frame = +1

Query: 31  PEDRSGPGDVRRQLLRDPQQEKHRAMARC*CPRAQ 135
           P   +G G +  Q+     Q ++   A C CP  Q
Sbjct: 263 PSPTAGAGGLPPQVPSPRSQRRYTGRATCDCPNCQ 297


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 21.4 bits (43), Expect = 3.4
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 178 EADFRGQFVIFLIDIEPEGINTEP 107
           E+D +     FL++I  EGI  EP
Sbjct: 370 ESDKQRTHQPFLLNIPSEGIKVEP 393


>AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory receptor
           candidate 45 protein.
          Length = 379

 Score = 21.0 bits (42), Expect = 4.5
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -2

Query: 243 LSIGLMMNLRSLNEMFRISD 184
           LS+G+ +    +N +FRI +
Sbjct: 189 LSLGIKLRYDDVNNLFRIEE 208


>AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory receptor
           candidate 8 protein.
          Length = 379

 Score = 21.0 bits (42), Expect = 4.5
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -2

Query: 243 LSIGLMMNLRSLNEMFRISD 184
           LS+G+ +    +N +FRI +
Sbjct: 189 LSLGIKLRYDDVNNLFRIEE 208


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 72,342
Number of Sequences: 336
Number of extensions: 1371
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8541369
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)