Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060284.seq
         (400 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A11.01 ||SPAPB24D3.11|membrane transporter|Schizosaccharom...    26   2.5  
SPAC1565.07c |||TATA binding protein interacting protein |Schizo...    26   2.5  
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr...    25   4.3  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    25   5.7  
SPCC4F11.03c |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    25   5.7  
SPAC17H9.08 |||mitochondrial coenzyme A transporter|Schizosaccha...    24   7.6  
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k...    24   10.0 
SPCC965.08c |alr1||alanine racemase Alr1|Schizosaccharomyces pom...    24   10.0 

>SPAPB1A11.01 ||SPAPB24D3.11|membrane
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 495

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -2

Query: 252 GAFLSIGLMMNLRSLNEMFRISDQGKPI 169
           G F S+GL +   SL++MF   D+GK I
Sbjct: 139 GFFGSVGLGIGAGSLSDMFSKRDRGKYI 166


>SPAC1565.07c |||TATA binding protein interacting protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1220

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +1

Query: 7   RRRRHDGIPEDRSGPGD 57
           R+RR++G+P DRS   D
Sbjct: 421 RKRRYEGLPSDRSAISD 437


>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 703

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = -2

Query: 393 PLAPAAFICCTSMVSGLRRXHVQLVVAHAQREXALV 286
           P A   FI CTS +SG+    +QLV+ +  RE   V
Sbjct: 374 PAAMILFISCTSFISGI----LQLVLLNNIREDGSV 405


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -1

Query: 148  FLIDIEPEGINTEP*LCV-FLVADLEVVDAVHLQVLS 41
            F+  +  +GI +EP LC+ F   +LE V    L+  S
Sbjct: 1611 FVYQLHKQGILSEPELCIQFFRCNLEAVLVAFLEAAS 1647


>SPCC4F11.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 335

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -1

Query: 235 RLDDELAVVERDVPDFRPGEADFRGQFVIFLIDIEPEGINT 113
           R+ +   VVERD+      E + + QF  F +   P G N+
Sbjct: 67  RIIEAKRVVERDLRSLEAKEVEEKSQFASF-VSATPPGANS 106


>SPAC17H9.08 |||mitochondrial coenzyme A
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 326

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +1

Query: 58  VRRQLLRDPQQEKH 99
           VRR L+RDP+ E H
Sbjct: 103 VRRVLIRDPEHETH 116


>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
           kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 836

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 196 EHLVQRPQVHHQADRQE 246
           EHL Q+  +HH AD +E
Sbjct: 97  EHLAQKKGLHHFADLKE 113


>SPCC965.08c |alr1||alanine racemase Alr1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 375

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = -1

Query: 253 GRLLVDRLDDELAVVERDVPDFRPG-EADFRGQFVIFLIDIEPEGINTEP 107
           GR+ +D L  +L+    D+PD +PG E  F G   + + DI     +T P
Sbjct: 313 GRVSMDMLTVDLS----DIPDVKPGDEVIFWGTPELTVADIAKYCSDTSP 358


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,270,217
Number of Sequences: 5004
Number of extensions: 22289
Number of successful extensions: 51
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)