Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060284.seq
         (400 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1241 - 25511462-25511614,25511690-25512499                       27   7.2  
08_02_0746 + 20721421-20721649,20722912-20722971,20723318-207233...    27   7.2  
03_06_0703 + 35632731-35633032,35633261-35633298,35634041-356341...    27   7.2  
03_02_0886 - 12173913-12174065,12174140-12174685                       27   7.2  
05_05_0267 - 23704249-23704401,23704476-23704780,23704967-237056...    26   9.5  

>08_02_1241 - 25511462-25511614,25511690-25512499
          Length = 320

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +1

Query: 13  RRHDGIPEDRSGPGDVRRQLLRDPQQEKHRAMA 111
           R  DG+ + +    + R+ L +D  QEKH + A
Sbjct: 268 REQDGVEQKKKDVSNKRKDLQQDISQEKHNSGA 300


>08_02_0746 +
           20721421-20721649,20722912-20722971,20723318-20723377,
           20723458-20723553,20723764-20723871,20724037-20724090,
           20724275-20724414,20724499-20724570,20724642-20724692,
           20724943-20725017,20725205-20725585,20726372-20727604,
           20727679-20727831
          Length = 903

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +1

Query: 13  RRHDGIPEDRSGPGDVRRQLLRDPQQEKHRAMA 111
           R  DG+ + +    + R+ L +D  QEKH + A
Sbjct: 851 REQDGVEQKKKDVSNKRKDLQQDISQEKHNSGA 883


>03_06_0703 +
           35632731-35633032,35633261-35633298,35634041-35634132,
           35639941-35640087
          Length = 192

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 18/62 (29%), Positives = 28/62 (45%)
 Frame = -1

Query: 244 LVDRLDDELAVVERDVPDFRPGEADFRGQFVIFLIDIEPEGINTEP*LCVFLVADLEVVD 65
           +V R    +AVV    P+ +P  A     +V+  +D  P GI T P + +    +  V D
Sbjct: 24  IVVRARRRVAVVTAAAPERKPAAAASSSNYVVVPLDAAPSGI-TRPLVEILRDLNKRVPD 82

Query: 64  AV 59
            V
Sbjct: 83  TV 84


>03_02_0886 - 12173913-12174065,12174140-12174685
          Length = 232

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +1

Query: 13  RRHDGIPEDRSGPGDVRRQLLRDPQQEKHRAMA 111
           R  DG+ + +    + R+ L +D  QEKH + A
Sbjct: 180 REQDGVEQKKKDVSNKRKDLQQDISQEKHNSGA 212


>05_05_0267 -
           23704249-23704401,23704476-23704780,23704967-23705674,
           23707772-23708114,23708300-23708374,23708625-23708675,
           23708747-23708818,23708903-23709042,23709227-23709280,
           23709446-23709553,23709769-23709864,23709946-23710005,
           23710352-23710411,23711699-23711927
          Length = 817

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +1

Query: 13  RRHDGIPEDRSGPGDVRRQLLRDPQQEKHRA 105
           R  DG+ + +    + R+ L +D  QEKH +
Sbjct: 765 REQDGVEQKKKDVSNKRKDLQQDISQEKHNS 795


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,791,685
Number of Sequences: 37544
Number of extensions: 151665
Number of successful extensions: 355
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 355
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)