Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060284.seq
(400 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45073| Best HMM Match : ERM (HMM E-Value=0) 87 4e-18
SB_31348| Best HMM Match : ERM (HMM E-Value=0) 68 6e-14
SB_57668| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 4e-04
SB_58305| Best HMM Match : Band_41 (HMM E-Value=4.8e-08) 38 0.002
SB_15888| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.012
SB_5728| Best HMM Match : Band_41 (HMM E-Value=1e-26) 34 0.037
SB_37871| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.4
SB_26502| Best HMM Match : Band_41 (HMM E-Value=1.4e-16) 28 2.4
SB_59662| Best HMM Match : efhand (HMM E-Value=2.2) 28 2.4
SB_46719| Best HMM Match : zf-nanos (HMM E-Value=3.9) 28 2.4
SB_27377| Best HMM Match : Neur_chan_memb (HMM E-Value=1.6e-22) 28 3.2
SB_52740| Best HMM Match : CbiA (HMM E-Value=1.4e-15) 28 3.2
SB_14023| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.2
SB_56656| Best HMM Match : VWA (HMM E-Value=3.8e-26) 27 4.3
SB_19748| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.3
SB_5940| Best HMM Match : Antimicrobial_3 (HMM E-Value=2.4) 27 4.3
SB_24388| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.3
SB_11648| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.3
SB_11764| Best HMM Match : DSHCT (HMM E-Value=1.9e-27) 27 5.6
SB_56833| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.4
SB_44236| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.4
SB_29897| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.4
SB_37084| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.8
SB_36117| Best HMM Match : Rubredoxin (HMM E-Value=1.8) 26 9.8
SB_35683| Best HMM Match : Amino_oxidase (HMM E-Value=0.0092) 26 9.8
>SB_45073| Best HMM Match : ERM (HMM E-Value=0)
Length = 504
Score = 87.4 bits (207), Expect = 4e-18
Identities = 39/63 (61%), Positives = 52/63 (82%)
Frame = +2
Query: 11 EDAMMEYLKIAQDLEMYGVNYFEIRNKKNTELWLGVDALGLNIYEKDDKLTPKIGFPWSE 190
EDA++EYLKI QDLEMYGVNYF+I+NKK+T+L+LGVDALGLNIY+++D G S
Sbjct: 123 EDAVIEYLKITQDLEMYGVNYFQIKNKKHTDLYLGVDALGLNIYDQNDNGVQSSGVQSSG 182
Query: 191 IRN 199
+++
Sbjct: 183 VQS 185
Score = 53.6 bits (123), Expect = 6e-08
Identities = 22/31 (70%), Positives = 25/31 (80%)
Frame = +1
Query: 241 QEGARFVFFAPRVRVNKRXLALCMGNHELYM 333
Q F+FF+PR+R NKR LALCMGNHELYM
Sbjct: 239 QSSGDFIFFSPRLRSNKRILALCMGNHELYM 269
Score = 27.1 bits (57), Expect = 5.6
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = +2
Query: 344 KPDTIDVQQMKA 379
KPDTI+VQQMKA
Sbjct: 273 KPDTIEVQQMKA 284
>SB_31348| Best HMM Match : ERM (HMM E-Value=0)
Length = 665
Score = 68.1 bits (159), Expect(2) = 6e-14
Identities = 28/47 (59%), Positives = 35/47 (74%)
Frame = +2
Query: 86 NKKNTELWLGVDALGLNIYEKDDKLTPKIGFPWSEIRNISFNDRKFI 226
NKK T + LG+D GLNIYEKD++L PK FPW EI+NISF+ R +
Sbjct: 64 NKKGTAISLGIDCRGLNIYEKDNRLNPKTSFPWKEIKNISFHSRTIL 110
Score = 25.4 bits (53), Expect(2) = 6e-14
Identities = 9/12 (75%), Positives = 12/12 (100%)
Frame = +2
Query: 344 KPDTIDVQQMKA 379
KPDT+++QQMKA
Sbjct: 125 KPDTMEIQQMKA 136
>SB_57668| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1107
Score = 40.7 bits (91), Expect = 4e-04
Identities = 20/72 (27%), Positives = 39/72 (54%)
Frame = +2
Query: 17 AMMEYLKIAQDLEMYGVNYFEIRNKKNTELWLGVDALGLNIYEKDDKLTPKIGFPWSEIR 196
A +L + L+MYGV+ +++ N +L+LG+ G+ I K++ GF W++I
Sbjct: 97 AEKNFLDKVKSLDMYGVDPHPCKDQDNVQLYLGLTPTGIAIIRDGKKVS---GFEWAQII 153
Query: 197 NISFNDRKFIIK 232
S+ + F ++
Sbjct: 154 KCSYEGKVFYVQ 165
>SB_58305| Best HMM Match : Band_41 (HMM E-Value=4.8e-08)
Length = 275
Score = 38.3 bits (85), Expect = 0.002
Identities = 22/58 (37%), Positives = 33/58 (56%)
Frame = +2
Query: 11 EDAMMEYLKIAQDLEMYGVNYFEIRNKKNTELWLGVDALGLNIYEKDDKLTPKIGFPW 184
E+A +YL+ A+ L MYGV+ R+ E+ +GV G+ ++ KDD K FPW
Sbjct: 127 EEADTQYLEAARKLTMYGVDAHPARDGNGDEVLVGVSYAGVLVF-KDDLRQNK--FPW 181
>SB_15888| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2437
Score = 35.9 bits (79), Expect = 0.012
Identities = 19/70 (27%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Frame = +2
Query: 14 DAMMEYLKIAQDLEMYGVNYFEIRNKKNTE----LWLGVDALGLNIYEKDDKL-TPKIGF 178
+A +E+LK A L YG++++ +++ K + L+LG+ G+ +YE + +P
Sbjct: 507 EAEIEFLKEAMRLPEYGLHFYRVQSDKKAQDADLLFLGICVRGVTVYESRGHIKSPIHKH 566
Query: 179 PWSEIRNISF 208
W + +SF
Sbjct: 567 SWQMTKKLSF 576
>SB_5728| Best HMM Match : Band_41 (HMM E-Value=1e-26)
Length = 906
Score = 34.3 bits (75), Expect = 0.037
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +2
Query: 14 DAMMEYLKIAQDLEMYGVNYFEIRNKKNTELWLGVDALGLNI 139
DA ME++++ Q LE YG Y+ ++ L +G LG+ I
Sbjct: 748 DAEMEFIRLVQQLEGYGDEYYPAKDNNGYVLLIGATFLGIVI 789
>SB_37871| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 214
Score = 29.1 bits (62), Expect = 1.4
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +2
Query: 137 IYEKDDKLTPKIGFPWSEIRNISFNDRKFIIKPIDKKAP 253
I E L GF WSE + + RKF++ + +K P
Sbjct: 158 IMETRKNLMDNDGFDWSEATKAAISKRKFLLSKMFRKQP 196
>SB_26502| Best HMM Match : Band_41 (HMM E-Value=1.4e-16)
Length = 573
Score = 28.3 bits (60), Expect = 2.4
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +2
Query: 17 AMMEYLKIAQDLEMYGVNYFEIRNKKNTELW 109
A +EYLK AQ L+ YG+ + ++ + +W
Sbjct: 401 AEIEYLKEAQKLQEYGIIFNKVSKFRQRRIW 431
>SB_59662| Best HMM Match : efhand (HMM E-Value=2.2)
Length = 318
Score = 28.3 bits (60), Expect = 2.4
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +2
Query: 131 LNIYEKDDKLTPKIGFPWSEIRNISFNDRKFIIKPI 238
L YEKDD++ W E+RNIS + K +I+ I
Sbjct: 83 LEYYEKDDRMKTTQVPQWRELRNIS-SPHKEVIRRI 117
>SB_46719| Best HMM Match : zf-nanos (HMM E-Value=3.9)
Length = 166
Score = 28.3 bits (60), Expect = 2.4
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +2
Query: 17 AMMEYLKIAQDLEMYGVNYFEIRNKKNTELWLGVDALGLNIYEKD 151
A +LK +LE +G+ + RN +L +GV + L I++ +
Sbjct: 82 AEYHFLKEIAELEDFGIEFHTARNNIGQQLHIGVGSEELRIFDTE 126
>SB_27377| Best HMM Match : Neur_chan_memb (HMM E-Value=1.6e-22)
Length = 200
Score = 27.9 bits (59), Expect = 3.2
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = -1
Query: 157 FVIFLIDIEPEGINTEP*LCVFLVADLEVVDAVHLQVLSDLQVFHH 20
F++ + D+ PE + P L VFL+A L +V + L + + V HH
Sbjct: 50 FLLVVPDLIPESSTSIPILGVFLMATLVMVSLI-LMITIFVLVIHH 94
>SB_52740| Best HMM Match : CbiA (HMM E-Value=1.4e-15)
Length = 480
Score = 27.9 bits (59), Expect = 3.2
Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = -1
Query: 250 RLLVDRLDDE-LAVVERDVPDFRPGEADFRGQ 158
R+LV LDDE +A + R D+RP A RGQ
Sbjct: 320 RVLVGELDDEQMAALSRLGNDYRPTSAYERGQ 351
>SB_14023| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 283
Score = 27.9 bits (59), Expect = 3.2
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +2
Query: 173 GFPWSEIRNISFNDRKFIIKPIDKKAP 253
GF WSE + N RKF++ + ++ P
Sbjct: 229 GFDWSEATESAINKRKFLLSKMFREQP 255
>SB_56656| Best HMM Match : VWA (HMM E-Value=3.8e-26)
Length = 2157
Score = 27.5 bits (58), Expect = 4.3
Identities = 17/54 (31%), Positives = 22/54 (40%)
Frame = +2
Query: 59 YGVNYFEIRNKKNTELWLGVDALGLNIYEKDDKLTPKIGFPWSEIRNISFNDRK 220
Y + Y E KK L L ALG+ K K FPW + + + RK
Sbjct: 678 YSIQYLETNCKKTCGLCLSAAALGVPSRTKTKKAR---DFPWQRVFDANKRKRK 728
>SB_19748| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 113
Score = 27.5 bits (58), Expect = 4.3
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +2
Query: 173 GFPWSEIRNISFNDRKFIIKPIDKKAP 253
GF WSE + ++RKF++ + K P
Sbjct: 61 GFDWSEATETAMDNRKFLLSKMFKDQP 87
>SB_5940| Best HMM Match : Antimicrobial_3 (HMM E-Value=2.4)
Length = 409
Score = 27.5 bits (58), Expect = 4.3
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +1
Query: 220 VHHQADRQEGARFVFFAPRVRVNKRXLALCMG 315
+H+ A+++ G +FF RV + + LC+G
Sbjct: 276 IHNNAEKRRGNETLFFLIRVSLTLSYIRLCVG 307
>SB_24388| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 172
Score = 27.5 bits (58), Expect = 4.3
Identities = 13/45 (28%), Positives = 26/45 (57%)
Frame = -1
Query: 157 FVIFLIDIEPEGINTEP*LCVFLVADLEVVDAVHLQVLSDLQVFH 23
F++ + D+ PE + P L +FL+A L +V + + + L ++H
Sbjct: 50 FLLVVPDLIPESSTSIPILGIFLMATLVMVSLILMITIFVLVIYH 94
>SB_11648| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 247
Score = 27.5 bits (58), Expect = 4.3
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = -1
Query: 157 FVIFLIDIEPEGINTEP*LCVFLVADLEVVDAVHLQVLSDLQVFH 23
F++ + D PE + P L VF++A L ++ + L + L +H
Sbjct: 109 FLLLIPDALPESSRSIPILGVFMMATLVMISCILLVTIMVLNFYH 153
>SB_11764| Best HMM Match : DSHCT (HMM E-Value=1.9e-27)
Length = 1492
Score = 27.1 bits (57), Expect = 5.6
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = -1
Query: 160 QFVIFLIDIEPEGINTEP*LCVFLVADLEVVDAVHLQ 50
Q ++ L + PEGI T + F + DL++VDA+ Q
Sbjct: 746 QELLRLTEANPEGIETMDPVKDFNIRDLDMVDAITRQ 782
>SB_56833| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 428
Score = 26.6 bits (56), Expect = 7.4
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +2
Query: 83 RNKKNTEL-WLGVDALGLNIYEKDDKL 160
R+ N EL W G++ LGL ++ KD L
Sbjct: 324 RHHDNAELFWKGIEDLGLKMFVKDKNL 350
>SB_44236| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 404
Score = 26.6 bits (56), Expect = 7.4
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +2
Query: 35 KIAQDLEMYGVNYFEIRNKKNTELWLGVDALGLNIYEKDDKLTPKIGF 178
+IA +E+ G+ F+ E V AL L +YE D +IGF
Sbjct: 198 EIAFQMEVRGIRLFQTIQSNLAEQARKVLALDLELYEDDPTRILEIGF 245
>SB_29897| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 96
Score = 26.6 bits (56), Expect = 7.4
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = +2
Query: 173 GFPWSEIRNISFNDRKFIIKPIDKKAP 253
GF WS + + N RKF++ + ++ P
Sbjct: 41 GFDWSVVTESTINKRKFLLSKMFREQP 67
>SB_37084| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1361
Score = 26.2 bits (55), Expect = 9.8
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -3
Query: 329 YSSWLPMHSAXMRLLTRT 276
YS WLP++ A MR+L T
Sbjct: 774 YSRWLPVYVADMRMLPST 791
>SB_36117| Best HMM Match : Rubredoxin (HMM E-Value=1.8)
Length = 996
Score = 26.2 bits (55), Expect = 9.8
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -3
Query: 329 YSSWLPMHSAXMRLLTRT 276
YS WLP++ A MR+L T
Sbjct: 589 YSRWLPVYVADMRMLPST 606
>SB_35683| Best HMM Match : Amino_oxidase (HMM E-Value=0.0092)
Length = 729
Score = 26.2 bits (55), Expect = 9.8
Identities = 15/66 (22%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Frame = +2
Query: 50 LEMYGVNYFEIRNKKNTEL-WLGVDALGLNIYEKDDKLTPKIGF-PWSEIRNISFNDRKF 223
L+ G++Y + + +L WL +A ++Y K + L P + F W ++ N+ +
Sbjct: 520 LQSVGLDYEIVVAHYDEDLNWLIPEASHCHVYHKGETLIPDLRFKQWEKLPNVGREAHSY 579
Query: 224 IIKPID 241
+ +D
Sbjct: 580 LHHIVD 585
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,897,888
Number of Sequences: 59808
Number of extensions: 178890
Number of successful extensions: 409
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 409
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 703143849
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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