Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060284.seq
         (400 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g53910.1 68418.m06708 (S)-2-hydroxy-acid oxidase, peroxisomal...    29   1.5  
At3g12940.1 68416.m01612 expressed protein                             27   6.1  
At2g39040.1 68415.m04799 peroxidase, putative similar to cationi...    26   8.0  
At2g14690.1 68415.m01652 glycosyl hydrolase family 10 protein si...    26   8.0  

>At5g53910.1 68418.m06708 (S)-2-hydroxy-acid oxidase, peroxisomal,
           putative / glycolate oxidase, putative / short chain
           alpha-hydroxy acid oxidase, putative contains Pfam
           profile: PF00097 zinc finger, C3HC4 type (RING finger)
          Length = 230

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = +2

Query: 11  EDAMMEYLKIAQDLEMYGVNYFEIRNKKNTELWLGVDALGLNIYEKDDKLTP 166
           +DA    LK+ Q       N FE   +    +WL +D   LN YE++ +  P
Sbjct: 77  QDAYTLILKLTQLARDLTSNSFEYCPRYALSVWLTLDVAPLNEYERNSEYRP 128


>At3g12940.1 68416.m01612 expressed protein 
          Length = 474

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = -1

Query: 172 DFRGQFVIFLIDIEPEGINTEP*LCVFLVADLEVVDAVHLQVLSDLQVFHHGVFA 8
           D  GQ+++  +D+ P+     P L ++      V  AVH   L+ LQ    G F+
Sbjct: 230 DMHGQWILVDVDLGPQEAVVYPGLALYQATAGYVSPAVHRTDLNSLQGSIEGRFS 284


>At2g39040.1 68415.m04799 peroxidase, putative similar to cationic
           peroxidase isozyme 38K precursor [Nicotiana tabacum]
           gi|575603|dbj|BAA07663
          Length = 350

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -1

Query: 139 DIEPEGINTEP*LCVFLVADLEVVDAVHLQVLSDLQVFHHGVF 11
           D+   G N      +F  +DL+VVD V L     + + H GVF
Sbjct: 182 DLPSAGANFTTLQKLFAESDLDVVDLVALSGAHTIGIAHCGVF 224


>At2g14690.1 68415.m01652 glycosyl hydrolase family 10 protein
           similar to tapetum specific protein GI:3885492 from [Zea
           mays]
          Length = 529

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +1

Query: 205 VQRPQVHHQADRQEGARFVFFAPRV 279
           V+ P  HH+ + +EG R + F+P +
Sbjct: 462 VEIPIQHHEHNDEEGGRIIGFSPEI 486


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,838,338
Number of Sequences: 28952
Number of extensions: 117945
Number of successful extensions: 236
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 236
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 575830496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)