Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060283.seq
         (691 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    23   1.8  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    23   2.4  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   3.1  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      23   3.1  
AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory recept...    22   4.1  
AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory recept...    22   4.1  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    22   5.4  
AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical pro...    21   9.5  

>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -1

Query: 379 LEQQTKNTLKSLKYLNLRG 323
           LE++    LKSLK LNL+G
Sbjct: 131 LERRAFMNLKSLKRLNLKG 149


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 310 IFKFSLSSSGILNFLKYFLFVVLITMHL 393
           IF+F   + G   F  +FLF ++I M+L
Sbjct: 656 IFRFRADNPGYWLFHCHFLFHIVIGMNL 683


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 12/60 (20%), Positives = 33/60 (55%)
 Frame = -3

Query: 452 ENKNLPYPIETYSISANNDERCIVIRTTNKKYFKKFKIPELERLNLNIEQANIQSSHHFN 273
           ++++LP  + +  +S NND+ C+ +  T +   +K  +   E+L   + +   ++ +H++
Sbjct: 290 KHEDLPQDL-SMKLSKNNDQ-CLDLSKTKETNLEKSNLNHNEQLRKYLCKNEDETKNHYS 347


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 12/60 (20%), Positives = 33/60 (55%)
 Frame = -3

Query: 452 ENKNLPYPIETYSISANNDERCIVIRTTNKKYFKKFKIPELERLNLNIEQANIQSSHHFN 273
           ++++LP  + +  +S NND+ C+ +  T +   +K  +   E+L   + +   ++ +H++
Sbjct: 182 KHEDLPQDL-SMKLSKNNDQ-CLDLSKTKETNLEKSNLNHNEQLRKYLCKNEDETKNHYS 239


>AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory receptor
           candidate 20 protein.
          Length = 393

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +3

Query: 159 GFYNH*VCP*LVLPSLILHTIPSPCRVVVEVSVHNY 266
           GFY   V   L+L S +LH + +P  +++EV    Y
Sbjct: 265 GFYG--VHTLLILFSCLLHLVVTPYYLLIEVCNAGY 298


>AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory receptor
           candidate 2 protein.
          Length = 587

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = +1

Query: 319 FSLSSSGILNFLKYFLFVV 375
           FS++   IL+F+ YF+F++
Sbjct: 384 FSITRGLILSFVDYFVFLL 402


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 11/38 (28%), Positives = 15/38 (39%)
 Frame = +3

Query: 324 PLKFRYFKLFKVFFVCCSNNYAPFIIVCTNRICFNWVW 437
           PL      L++ FF C +     F  +  N IC    W
Sbjct: 296 PLSLHGQLLWREFFYCAATKNPNFDKMIGNPICVQIPW 333


>AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical
           protein protein.
          Length = 205

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = +3

Query: 357 VFFVCCSNNYAPFI 398
           V+  CC NN+  F+
Sbjct: 158 VYVYCCDNNFNVFL 171


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,839
Number of Sequences: 336
Number of extensions: 3194
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18114270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)