Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060283.seq
         (691 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4G3.09c |gyp3||GTPase activating protein Gyp3|Schizosaccharo...    31   0.21 
SPBC409.12c |||nuclear telomere cap complex subunit Stn1|Schizos...    30   0.36 
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    29   0.84 
SPBC660.13c |ssb1|rpa1, rad11|DNA replication factor A subunit S...    27   1.9  
SPCC790.03 |||rhomboid family protease|Schizosaccharomyces pombe...    27   2.6  
SPAC29B12.10c |||OPT oligopeptide transporter family|Schizosacch...    26   5.9  
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   7.8  

>SPCC4G3.09c |gyp3||GTPase activating protein
           Gyp3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 635

 Score = 30.7 bits (66), Expect = 0.21
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = -3

Query: 506 MQRPASSIQEEYENKFRMENKNLPYPIETYSISANNDERCIVIRTTNKKY 357
           +Q P      EYE+KFR+  +  P    + S   +  E C+   T++ K+
Sbjct: 123 LQNPVVDSNNEYESKFRLSLEIPPTDFLSTSTELSKRESCLSTETSSSKF 172


>SPBC409.12c |||nuclear telomere cap complex subunit
           Stn1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 2/96 (2%)
 Frame = -3

Query: 542 CLFQIVIVLK*RMQRPASSIQE--EYENKFRMENKNLPYPIETYSISANNDERCIVIRTT 369
           C+F  +   +  ++  A S +E  +  ++++   K + Y      IS N+     +IRT 
Sbjct: 104 CVFGKINSFRSEVELIAQSFEELRDPNDEWKAWQKRMRYKKNLTKISKNHHS---IIRTP 160

Query: 368 NKKYFKKFKIPELERLNLNIEQANIQSSHHFNTLII 261
            K YF K    EL +    + + N+Q+      LII
Sbjct: 161 KKSYFPKDHAKELLKCIRQMCKLNVQAGFTIEELII 196


>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 28.7 bits (61), Expect = 0.84
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = +1

Query: 298  LACSIFKFSLSSSGILNFLKYFLFVVLITMHLSS-LFALIEYVSIGYGRFLFSIL 459
            L C+ F   L S G  NF       +L    L S +F++ +  +  +GRFL+ +L
Sbjct: 1099 LYCAKFVKLLHSLGTPNFSTMSFLEILFNSQLPSFIFSMTQREADNFGRFLYEVL 1153


>SPBC660.13c |ssb1|rpa1, rad11|DNA replication factor A subunit Ssb1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 609

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
 Frame = -1

Query: 514 NNECKDQPQVFRRNTRINLEWRIKIYHTQLKHILLVQTMMKGA*L-LEQQTKNTLKSLKY 338
           +N     P+ +R     ++ +   +  TQL H++    + KGA + L Q T N +K  K 
Sbjct: 37  SNPTSGAPKRYRVVLSDSINYAQSMLSTQLNHLVAENKLQKGAFVQLTQFTVNVMKERKI 96

Query: 337 LNLRG 323
           L + G
Sbjct: 97  LIVLG 101


>SPCC790.03 |||rhomboid family protease|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 248

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +1

Query: 322 SLSSSGILNFLKYFLFVVLITMHLSSLFALIEYVSI 429
           SLS  G+L   + +  +  +T+HLS L  +  +VS+
Sbjct: 41  SLSWIGLLQKRQLYEIITYVTLHLSMLHIVFNFVSL 76


>SPAC29B12.10c |||OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +1

Query: 361 FLFVVLITMHLSSLFALIEYVSIGYGRFLF 450
           F+   LI   L  L  L+    IGYGRF F
Sbjct: 185 FIVAQLILFPLGKLLNLLPNWKIGYGRFSF 214


>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = -3

Query: 467 NKFRMENKNLPYPIETYSISANNDERCIVIRTTNKKYFKKFKIPELERLN 318
           N  +    +LP PI +Y+IS  +D   + I   ++ +F  F +  L   N
Sbjct: 391 NGLQAAKVDLPGPINSYTIS--SDRSVVAILVNSQIFFYSFPVSNLFSTN 438


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,577,011
Number of Sequences: 5004
Number of extensions: 52682
Number of successful extensions: 153
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)