Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060283.seq
         (691 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0342 + 16956776-16957056,16958667-16958738,16959146-169592...    32   0.37 
04_04_0631 - 26728144-26728228,26728321-26728398,26728584-267286...    29   4.6  
04_04_0425 - 25121344-25121603,25121696-25121838,25122144-251223...    28   6.1  

>10_08_0342 +
           16956776-16957056,16958667-16958738,16959146-16959254,
           16959588-16959632
          Length = 168

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
 Frame = +2

Query: 491 RLVFAFVISAQSLFEIGIRYGITNFYMAIFLHHQVFLSPSKL*RNKTCVSTLYSSTISL- 667
           RL+ A   S +S  EIG   G+TN Y+A  L  Q  L P      +  V  L    ++L 
Sbjct: 15  RLMAAKAESRKSFSEIGEEAGLTNVYVAQLLRRQAQLKPETAPALRAAVPGLTDDLVALM 74

Query: 668 --PVFRT 682
             P FR+
Sbjct: 75  MEPPFRS 81


>04_04_0631 -
           26728144-26728228,26728321-26728398,26728584-26728650,
           26728748-26728824,26729961-26730012,26730248-26730294,
           26730457-26730527
          Length = 158

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 573 PFSFTTKFSFHLPSSNVIKLVYLHYIPLPF 662
           P S   +F FH P  N +  ++LH + LPF
Sbjct: 99  PNSEEQRFGFHQPPFNSVDHLHLHCLALPF 128


>04_04_0425 -
           25121344-25121603,25121696-25121838,25122144-25122348,
           25122453-25122590,25122999-25123185,25123519-25123852,
           25123930-25124018,25124088-25124231,25124514-25124603
          Length = 529

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 14/32 (43%), Positives = 22/32 (68%)
 Frame = +1

Query: 319 FSLSSSGILNFLKYFLFVVLITMHLSSLFALI 414
           + +  +G+LNFL  F F VL++ + S+ FALI
Sbjct: 38  YKIWQAGVLNFLSIFNFPVLLSSY-STKFALI 68


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,876,487
Number of Sequences: 37544
Number of extensions: 276727
Number of successful extensions: 610
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 610
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)