Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060283.seq
         (691 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54895| Best HMM Match : S1 (HMM E-Value=4.3)                        46   4e-05
SB_948| Best HMM Match : Sec62 (HMM E-Value=9.5)                       31   1.2  
SB_40011| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_44745| Best HMM Match : zf-C2H2 (HMM E-Value=2.2e-05)               30   2.0  
SB_5835| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.2  
SB_59548| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.2  
SB_53329| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.2  

>SB_54895| Best HMM Match : S1 (HMM E-Value=4.3)
          Length = 479

 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 17/44 (38%), Positives = 29/44 (65%)
 Frame = -3

Query: 485 IQEEYENKFRMENKNLPYPIETYSISANNDERCIVIRTTNKKYF 354
           I+++    F+   +NLPYP+E YS++ ++D + I  RT NKK +
Sbjct: 4   IRKDVNKAFQWRVRNLPYPLEVYSVTVDDDRKTITTRTNNKKKY 47


>SB_948| Best HMM Match : Sec62 (HMM E-Value=9.5)
          Length = 306

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = -2

Query: 297 YTIFSSFQHINNYVQKPQQLLDMEKEWYEELKKVKPI 187
           Y I S      NYV  P+++L+ +   YEELK  KPI
Sbjct: 236 YEIISPSLPTKNYVV-PREVLEAKNHTYEELKAAKPI 271


>SB_40011| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 148

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 21/88 (23%), Positives = 43/88 (48%), Gaps = 9/88 (10%)
 Frame = +1

Query: 340 ILNFLKYFLFVVLIT-MHLSSLFALIEYVSIGYGRFLFSILNLFSYSS*ILEAGLCIRYF 516
           I+ ++    ++ +IT M + +  A+I Y++I     + + + + +Y + I+     I Y 
Sbjct: 39  IITYMAIITYMAIITYMAIITYMAIITYMAIITYMTIITYMTIITYMT-IITYMTIITYM 97

Query: 517 STIT--------I*NRHQVWDHQFLHGH 576
           + IT        + + H + DH  LHGH
Sbjct: 98  TIITYILHDHHQLHDHHHLHDHHHLHGH 125


>SB_44745| Best HMM Match : zf-C2H2 (HMM E-Value=2.2e-05)
          Length = 572

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/34 (44%), Positives = 22/34 (64%)
 Frame = +2

Query: 440 DFYSPF*IYSRIPPEYLRLVFAFVISAQSLFEIG 541
           D  SPF  +SR    +L+LV+  + SA+S+ EIG
Sbjct: 207 DHCSPFSKHSRTKMSFLQLVYTKLYSAESIREIG 240


>SB_5835| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 875

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 17/49 (34%), Positives = 20/49 (40%)
 Frame = +2

Query: 470 RIPPEYLRLVFAFVISAQSLFEIGIRYGITNFYMAIFLHHQVFLSPSKL 616
           RIPP      F  + S + L   G    ITN Y    LHH      SK+
Sbjct: 157 RIPPIICAAKFNAIESCRVLLRAGADVNITNCYGQTALHHATRRGHSKM 205


>SB_59548| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2835

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 16/39 (41%), Positives = 19/39 (48%)
 Frame = -3

Query: 344  KIPELERLNLNIEQANIQSSHHFNTLIIMYRNLNNYSTW 228
            K+P  E LN+NI Q N       NT+ I    L N  TW
Sbjct: 1393 KLPRTESLNINIRQEN-------NTIDIQLAELRNPFTW 1424


>SB_53329| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 261

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +2

Query: 440 DFYSPF*IYSRIPPEYLRLVFAFVISAQSLFEIG 541
           D  SPF  +S     +L+LV+  + SA+S+ EIG
Sbjct: 207 DHCSPFSKHSHTKMSFLQLVYTKLYSAESIREIG 240


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,783,270
Number of Sequences: 59808
Number of extensions: 343104
Number of successful extensions: 640
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)