Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060283.seq
(691 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC031695-1|AAH31695.1| 203|Homo sapiens deleted in a mouse mode... 87 7e-17
BC001082-1|AAH01082.2| 203|Homo sapiens deleted in a mouse mode... 87 7e-17
AY532267-1|AAS46252.1| 200|Homo sapiens DPCD protein. 87 7e-17
AL627424-15|CAI41040.1| 203|Homo sapiens novel protein protein. 87 7e-17
AL627424-14|CAI41039.1| 170|Homo sapiens novel protein protein. 55 3e-07
AL627424-16|CAI41041.1| 116|Homo sapiens novel protein protein. 53 1e-06
Z15005-1|CAA78727.1| 2663|Homo sapiens CENP-E protein. 30 8.9
BC002767-1|AAH02767.1| 690|Homo sapiens LATS1 protein protein. 30 8.9
AB209996-1|BAE06078.1| 2585|Homo sapiens CENPE variant protein p... 30 8.9
>BC031695-1|AAH31695.1| 203|Homo sapiens deleted in a mouse model
of primary ciliary dyskinesia protein.
Length = 203
Score = 86.6 bits (205), Expect = 7e-17
Identities = 45/123 (36%), Positives = 68/123 (55%)
Frame = -3
Query: 620 VRAWKVKGKLGGEGKWPCRNW*SHT*CLFQIVIVLK*RMQRPASSIQEEYENKFRMENKN 441
VR W+VK LG G+W + L ++++ + F+ +N
Sbjct: 49 VRKWRVKSALGAMGQWQLEVGDPAPLGAGNLGPELIKESNANPIFMRKDTKMSFQWRIRN 108
Query: 440 LPYPIETYSISANNDERCIVIRTTNKKYFKKFKIPELERLNLNIEQANIQSSHHFNTLII 261
LPYP + YS+S + ERCI++RTTNKKY+KKF IP+L+R L ++ A + +H TLII
Sbjct: 109 LPYPKDVYSVSVDQKERCIIVRTTNKKYYKKFSIPDLDRHQLPLDDALLSFAHANCTLII 168
Query: 260 MYR 252
Y+
Sbjct: 169 SYQ 171
Score = 35.5 bits (78), Expect = 0.18
Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Frame = -2
Query: 282 SFQHINNYV----QKPQQLLDMEKEWYEELKKVKPIKDIPNDCKTQ 157
SF H N + QKP++++ E E +ELKKVK DCKTQ
Sbjct: 158 SFAHANCTLIISYQKPKEVVVAESELQKELKKVKTAHSNDGDCKTQ 203
>BC001082-1|AAH01082.2| 203|Homo sapiens deleted in a mouse model
of primary ciliary dyskinesia protein.
Length = 203
Score = 86.6 bits (205), Expect = 7e-17
Identities = 45/123 (36%), Positives = 68/123 (55%)
Frame = -3
Query: 620 VRAWKVKGKLGGEGKWPCRNW*SHT*CLFQIVIVLK*RMQRPASSIQEEYENKFRMENKN 441
VR W+VK LG G+W + L ++++ + F+ +N
Sbjct: 49 VRKWRVKSALGAMGQWQLEVGDPAPLGAGNLGPELIKESNANPIFMRKDTKMSFQWRIRN 108
Query: 440 LPYPIETYSISANNDERCIVIRTTNKKYFKKFKIPELERLNLNIEQANIQSSHHFNTLII 261
LPYP + YS+S + ERCI++RTTNKKY+KKF IP+L+R L ++ A + +H TLII
Sbjct: 109 LPYPKDVYSVSVDQKERCIIVRTTNKKYYKKFSIPDLDRHQLPLDDALLSFAHANCTLII 168
Query: 260 MYR 252
Y+
Sbjct: 169 SYQ 171
Score = 35.5 bits (78), Expect = 0.18
Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Frame = -2
Query: 282 SFQHINNYV----QKPQQLLDMEKEWYEELKKVKPIKDIPNDCKTQ 157
SF H N + QKP++++ E E +ELKKVK DCKTQ
Sbjct: 158 SFAHANCTLIISYQKPKEVVVAESELQKELKKVKTAHSNDGDCKTQ 203
>AY532267-1|AAS46252.1| 200|Homo sapiens DPCD protein.
Length = 200
Score = 86.6 bits (205), Expect = 7e-17
Identities = 45/123 (36%), Positives = 68/123 (55%)
Frame = -3
Query: 620 VRAWKVKGKLGGEGKWPCRNW*SHT*CLFQIVIVLK*RMQRPASSIQEEYENKFRMENKN 441
VR W+VK LG G+W + L ++++ + F+ +N
Sbjct: 46 VRKWRVKSALGAMGQWQLEVGDPAPLGAGNLGPELIKESNANPIFMRKDTKMSFQWRIRN 105
Query: 440 LPYPIETYSISANNDERCIVIRTTNKKYFKKFKIPELERLNLNIEQANIQSSHHFNTLII 261
LPYP + YS+S + ERCI++RTTNKKY+KKF IP+L+R L ++ A + +H TLII
Sbjct: 106 LPYPKDVYSVSVDQKERCIIVRTTNKKYYKKFSIPDLDRHQLPLDDALLSFAHANCTLII 165
Query: 260 MYR 252
Y+
Sbjct: 166 SYQ 168
Score = 35.5 bits (78), Expect = 0.18
Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Frame = -2
Query: 282 SFQHINNYV----QKPQQLLDMEKEWYEELKKVKPIKDIPNDCKTQ 157
SF H N + QKP++++ E E +ELKKVK DCKTQ
Sbjct: 155 SFAHANCTLIISYQKPKEVVVAESELQKELKKVKTAHSNDGDCKTQ 200
>AL627424-15|CAI41040.1| 203|Homo sapiens novel protein protein.
Length = 203
Score = 86.6 bits (205), Expect = 7e-17
Identities = 45/123 (36%), Positives = 68/123 (55%)
Frame = -3
Query: 620 VRAWKVKGKLGGEGKWPCRNW*SHT*CLFQIVIVLK*RMQRPASSIQEEYENKFRMENKN 441
VR W+VK LG G+W + L ++++ + F+ +N
Sbjct: 49 VRKWRVKSALGAMGQWQLEVGDPAPLGAGNLGPELIKESNANPIFMRKDTKMSFQWRIRN 108
Query: 440 LPYPIETYSISANNDERCIVIRTTNKKYFKKFKIPELERLNLNIEQANIQSSHHFNTLII 261
LPYP + YS+S + ERCI++RTTNKKY+KKF IP+L+R L ++ A + +H TLII
Sbjct: 109 LPYPKDVYSVSVDQKERCIIVRTTNKKYYKKFSIPDLDRHQLPLDDALLSFAHANCTLII 168
Query: 260 MYR 252
Y+
Sbjct: 169 SYQ 171
Score = 35.5 bits (78), Expect = 0.18
Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Frame = -2
Query: 282 SFQHINNYV----QKPQQLLDMEKEWYEELKKVKPIKDIPNDCKTQ 157
SF H N + QKP++++ E E +ELKKVK DCKTQ
Sbjct: 158 SFAHANCTLIISYQKPKEVVVAESELQKELKKVKTAHSNDGDCKTQ 203
>AL627424-14|CAI41039.1| 170|Homo sapiens novel protein protein.
Length = 170
Score = 54.8 bits (126), Expect = 3e-07
Identities = 29/87 (33%), Positives = 44/87 (50%)
Frame = -3
Query: 620 VRAWKVKGKLGGEGKWPCRNW*SHT*CLFQIVIVLK*RMQRPASSIQEEYENKFRMENKN 441
VR W+VK LG G+W + L ++++ + F+ +N
Sbjct: 49 VRKWRVKSALGAMGQWQLEVGDPAPLGAGNLGPELIKESNANPIFMRKDTKMSFQWRIRN 108
Query: 440 LPYPIETYSISANNDERCIVIRTTNKK 360
LPYP + YS+S + ERCI++RTTNKK
Sbjct: 109 LPYPKDVYSVSVDQKERCIIVRTTNKK 135
>AL627424-16|CAI41041.1| 116|Homo sapiens novel protein protein.
Length = 116
Score = 52.8 bits (121), Expect = 1e-06
Identities = 28/86 (32%), Positives = 43/86 (50%)
Frame = -3
Query: 620 VRAWKVKGKLGGEGKWPCRNW*SHT*CLFQIVIVLK*RMQRPASSIQEEYENKFRMENKN 441
VR W+VK LG G+W + L ++++ + F+ +N
Sbjct: 13 VRKWRVKSALGAMGQWQLEVGDPAPLGAGNLGPELIKESNANPIFMRKDTKMSFQWRIRN 72
Query: 440 LPYPIETYSISANNDERCIVIRTTNK 363
LPYP + YS+S + ERCI++RTTNK
Sbjct: 73 LPYPKDVYSVSVDQKERCIIVRTTNK 98
>Z15005-1|CAA78727.1| 2663|Homo sapiens CENP-E protein.
Length = 2663
Score = 29.9 bits (64), Expect = 8.9
Identities = 12/33 (36%), Positives = 23/33 (69%)
Frame = -2
Query: 255 QKPQQLLDMEKEWYEELKKVKPIKDIPNDCKTQ 157
+K QQLL++++E E KK+ I+++ N+ K +
Sbjct: 1138 EKQQQLLNVQEEMSEMQKKINEIENLKNELKNK 1170
>BC002767-1|AAH02767.1| 690|Homo sapiens LATS1 protein protein.
Length = 690
Score = 29.9 bits (64), Expect = 8.9
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -2
Query: 276 QHINNYVQKPQQLLDMEKEWYEELKKVKPIK 184
QH+ N ++ QQ L +K+ E+ +VKP K
Sbjct: 645 QHVENVLKSHQQRLHRKKQLENEMMRVKPFK 675
>AB209996-1|BAE06078.1| 2585|Homo sapiens CENPE variant protein
protein.
Length = 2585
Score = 29.9 bits (64), Expect = 8.9
Identities = 12/33 (36%), Positives = 23/33 (69%)
Frame = -2
Query: 255 QKPQQLLDMEKEWYEELKKVKPIKDIPNDCKTQ 157
+K QQLL++++E E KK+ I+++ N+ K +
Sbjct: 1118 EKQQQLLNVQEEMSEMQKKINEIENLKNELKNK 1150
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,216,248
Number of Sequences: 237096
Number of extensions: 1692573
Number of successful extensions: 3126
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3030
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3126
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7895240574
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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