Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060283.seq
         (691 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g26910.1 68416.m03367 hydroxyproline-rich glycoprotein family...    30   1.7  
At5g60440.1 68418.m07581 MADS-box protein (AGL62) contains Pfal ...    29   2.9  
At2g46560.1 68415.m05808 transducin family protein / WD-40 repea...    29   2.9  
At1g54610.1 68414.m06228 protein kinase family protein contains ...    28   5.1  

>At3g26910.1 68416.m03367 hydroxyproline-rich glycoprotein family
           protein common family member:At2g33490 [Arabidopsis
           thaliana]
          Length = 608

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 20/87 (22%), Positives = 34/87 (39%)
 Frame = -3

Query: 494 ASSIQEEYENKFRMENKNLPYPIETYSISANNDERCIVIRTTNKKYFKKFKIPELERLNL 315
           ASS+   +  K    + + P P  T   + N D R     +T  KY      P       
Sbjct: 279 ASSLSTPWATKMDDTDLSFPRPSTTRPAAVNADHREEYPVSTRDKYLSSHSAPLFPEKKP 338

Query: 314 NIEQANIQSSHHFNTLIIMYRNLNNYS 234
           ++ +   Q++  FN  ++   N + YS
Sbjct: 339 DVSERLRQANPSFNAYVLPTPNDSRYS 365


>At5g60440.1 68418.m07581 MADS-box protein (AGL62) contains Pfal
           profile PF00319: SRF-type transcription factor
           (DNA-binding and dimerisation domain)
          Length = 299

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = -2

Query: 285 SSFQHINNYVQKPQQLLDMEKEWYEELKKVK 193
           S  Q +NN++ +    L+ EK+ Y+ELKK++
Sbjct: 97  SIVQDLNNHLTQVLSQLETEKKKYDELKKIR 127


>At2g46560.1 68415.m05808 transducin family protein / WD-40 repeat
            family protein similar to CPY (GI:3096961) {Chironomus
            thummi}; contains Pfam PF00400: WD domain, G-beta repeat
            (8 copies, 3 weak)|9780477|gb|BE522499.1|BE522499
          Length = 2471

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
 Frame = -3

Query: 455  MENKNLPYPIETYSISANNDERCIVIRTTNKKYFKKFKIPELERLNLNIEQ--ANIQSSH 282
            +EN  + YP+  YSI    DERC+V +    K+   F   +L  +++N++   +N  S+ 
Sbjct: 1799 VENHGVGYPV--YSIP--EDERCLVTQACFWKHVSDFVKLKLVSISINLDDGISNSGSAE 1854

Query: 281  HFN 273
            +F+
Sbjct: 1855 NFD 1857


>At1g54610.1 68414.m06228 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 572

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
 Frame = -3

Query: 509 RMQRPASSIQEEYENKFR---MENKNLPYPIETYSISANNDERCIVIRTTNKKYFKKFKI 339
           R QR AS  Q +   K R     N+ LP P     + +N D R ++     K   +KF  
Sbjct: 433 RRQRAASKAQGDGARKNRHRDRSNRALPAPEANAELQSNVDRRRLITHANAKSKSEKFPP 492

Query: 338 P 336
           P
Sbjct: 493 P 493


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,764,042
Number of Sequences: 28952
Number of extensions: 250192
Number of successful extensions: 669
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 669
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)