Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060282.seq
         (678 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    25   0.75 
AM292324-1|CAL23136.1|  398|Tribolium castaneum gustatory recept...    25   0.75 
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   5.3  

>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 24.6 bits (51), Expect = 0.75
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -2

Query: 467 HQHLRVTF*MFNYFLGCIIIIQLFNVYLSL 378
           HQHL  +  +FN   G  +++   N +LS+
Sbjct: 230 HQHLSKSVKLFNEVFGVSLLVLFGNSFLSI 259


>AM292324-1|CAL23136.1|  398|Tribolium castaneum gustatory receptor
           candidate 3 protein.
          Length = 398

 Score = 24.6 bits (51), Expect = 0.75
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -2

Query: 467 HQHLRVTF*MFNYFLGCIIIIQLFNVYLSL 378
           HQHL  +  +FN   G  +++   N +LS+
Sbjct: 248 HQHLSKSVKLFNEVFGVSLLVLFGNSFLSI 277


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 7/37 (18%), Positives = 18/37 (48%)
 Frame = +1

Query: 457 RC*WCDSSSRTIL*VSLEYYRVRGPTAVLPRSASVRW 567
           +C WC  S R++  ++    + +  T ++ +   + W
Sbjct: 480 KCMWCGQSFRSLAEMTSHMQQTQHYTNIISQEQIISW 516


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,402
Number of Sequences: 336
Number of extensions: 3134
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17697850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)