Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060282.seq
         (678 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC607.05 |rpn9||19S proteasome regulatory subunit Rpn9|Schizos...    47   2e-06
SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces...    29   0.47 
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce...    29   0.47 
SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces pombe...    29   0.62 
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa...    29   0.82 
SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyc...    28   1.4  
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc...    27   1.9  
SPBC3D6.07 |gpi3||pig-A|Schizosaccharomyces pombe|chr 2|||Manual       27   3.3  
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ...    25   7.6  
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma...    25   7.6  

>SPAC607.05 |rpn9||19S proteasome regulatory subunit
           Rpn9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 381

 Score = 47.2 bits (107), Expect = 2e-06
 Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
 Frame = +1

Query: 31  IDVSDFLTKKQASEP-ALAADWAKLEELYNKKLWHQLTLKLQEFVKNPALQRGDNLIQLY 207
           +++SDFL  +    P +L   +  +E+LY +KLW QLT  L  F   P  +     + LY
Sbjct: 7   VNMSDFLHDQATRAPESLQQSYILMEDLYERKLWKQLTDALIVFFDTP--ETVPLRLPLY 64

Query: 208 NNFLTTFESKINPLSLLRSLLISWNSMSTRE 300
            NF+ +F   IN L  +   L ++ S S  E
Sbjct: 65  TNFVNSFRPNINQLKAVYMGLKAFESCSNDE 95



 Score = 26.6 bits (56), Expect = 3.3
 Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
 Frame = +2

Query: 479 VHGRFYKLASNITESVVPLP-YYRAALRYVGCADGGEAYLPLNVLISXSD*LSLECWLPD 655
           +H  +Y ++++  ++      YYR  L Y+ C D  +       L+  +  LS+   L D
Sbjct: 157 IHSSYYSVSADYYKAKADYAQYYRHCLLYLSCIDLDKC--SHTELVERAVDLSVAAILGD 214

Query: 656 XYEFG 670
            Y FG
Sbjct: 215 IYNFG 219


>SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 995

 Score = 29.5 bits (63), Expect = 0.47
 Identities = 21/60 (35%), Positives = 30/60 (50%)
 Frame = +1

Query: 88   DWAKLEELYNKKLWHQLTLKLQEFVKNPALQRGDNLIQLYNNFLTTFESKINPLSLLRSL 267
            DW   + +Y +     +TL       N A+ RG N+I +    LTT E+K NP  LL +L
Sbjct: 829  DWYDHKVIYRQHN-ENITLSAPLTHINVAI-RGGNIIPMQKPSLTTHETKQNPYDLLVAL 886


>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 993

 Score = 29.5 bits (63), Expect = 0.47
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = +1

Query: 181 RGDNLIQLYNNFLTTFESKINPLSLL 258
           RG N+I L     TT+ES+ NP SLL
Sbjct: 861 RGGNIIPLQQPGYTTYESRNNPYSLL 886


>SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 675

 Score = 29.1 bits (62), Expect = 0.62
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
 Frame = +1

Query: 100 LEELYNKKLWHQLTLKLQEFVKNPALQRGDNLI---QLYNNFLTTFESKI 240
           +E  Y    WH+L  +LQ+    P L    NL+   Q Y    + F SKI
Sbjct: 81  IEPNYLLTAWHELWEELQDTYMTPILDSEANLLLLTQFYGKISSLFRSKI 130


>SPCC550.03c |||RNA helicase involved in mRNA
           catabolism|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1213

 Score = 28.7 bits (61), Expect = 0.82
 Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
 Frame = +3

Query: 153 RIRQESGPAEGRQPHTVVQ*LFDHLRKQNKSPIIVEIIA-HIVEQYVN---KRDAVTFLE 320
           R R  +   E R  +T V  L  HL KQN  P+IV + +    E+YV+    RD     E
Sbjct: 522 RGRGSAKSVERRDANTWVH-LIGHLHKQNLLPVIVFVFSKKRCEEYVDTLTNRDLNNHQE 580

Query: 321 KVETKVKMNDEALALCK 371
           K E  V + ++A+A  K
Sbjct: 581 KSEVHVVI-EKAVARLK 596


>SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = +1

Query: 181 RGDNLIQLYNNFLTTFESKINPLSLLRSL 267
           RG +++ +    LTT+ES+ NP +LL +L
Sbjct: 836 RGGSVLPMQQPSLTTYESRQNPFNLLVAL 864


>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1573

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 11/44 (25%), Positives = 21/44 (47%)
 Frame = -3

Query: 640 LQRELV*XRYQHVQWQVGLTPVGAPNVPKRCAVVRQWDHGLCNI 509
           L R++    +    W V +TP G+ ++  R  V+    +G C +
Sbjct: 391 LSRDVKVDEFTKSSWDVVVTPPGSKSISNRALVLAAMGNGTCRL 434


>SPBC3D6.07 |gpi3||pig-A|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 456

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -1

Query: 468 PSASSSDFLNVQLFSRLHHN 409
           PS +S DFL + + SRL++N
Sbjct: 183 PSKASKDFLTIVVISRLYYN 202


>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 308

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = +3

Query: 255 VEIIAHI--VEQYVNKRDAVTFLEKVETKVKMNDEALALCKVLQGQIYIEQLND 410
           V+++ ++  VE    +RD VTF   +E  V  + +A   C + +  +  E L D
Sbjct: 80  VQVLIYVFDVESREFERDLVTFRNCLEATVANSPQARVFCLIHKMDLVQEDLRD 133


>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1000

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 16/38 (42%), Positives = 26/38 (68%)
 Frame = -1

Query: 216 KVIVQLYEVVSPLQGRILDEFLQF*SKLVP*FFIVKFL 103
           +V+ ++Y VVS  +GR++DE ++   +  P FFIVK L
Sbjct: 876 EVLGRVYGVVSKRRGRVIDEEMK---EGTP-FFIVKAL 909


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,680,506
Number of Sequences: 5004
Number of extensions: 54528
Number of successful extensions: 183
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)