Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060282.seq
         (678 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0154 + 5967512-5967658,5968206-5968652,5968766-5968846,596...    89   4e-18
01_05_0085 - 17995800-17995985,17996724-17996823,17996919-179971...    84   1e-16
09_04_0469 + 17864265-17864789,17865648-17865854,17865936-178661...    29   4.5  
01_06_0317 + 28425408-28426079,28426286-28426351                       29   4.5  
01_05_0624 + 23772613-23774671,23774737-23775596                       28   6.0  
05_05_0253 - 23632907-23633646,23633758-23635050,23636471-23636663     28   7.9  

>03_02_0154 +
           5967512-5967658,5968206-5968652,5968766-5968846,
           5969058-5969075,5969552-5969748,5969844-5969943,
           5970676-5970861
          Length = 391

 Score = 88.6 bits (210), Expect = 4e-18
 Identities = 41/77 (53%), Positives = 54/77 (70%)
 Frame = +1

Query: 46  FLTKKQASEPALAADWAKLEELYNKKLWHQLTLKLQEFVKNPALQRGDNLIQLYNNFLTT 225
           F+  ++ + P LA  +A L +LY +KLWHQLTLKL  F++ PA Q GD LIQLYNNF+T 
Sbjct: 5   FVESQREARPELADPYADLADLYQRKLWHQLTLKLDHFLQLPAAQTGDTLIQLYNNFITD 64

Query: 226 FESKINPLSLLRSLLIS 276
           FE+KIN L L    +I+
Sbjct: 65  FETKINLLKLAHFAVIA 81


>01_05_0085 -
           17995800-17995985,17996724-17996823,17996919-17997115,
           17997836-17997916,17998046-17998492,17998774-17998920
          Length = 385

 Score = 83.8 bits (198), Expect = 1e-16
 Identities = 38/77 (49%), Positives = 54/77 (70%)
 Frame = +1

Query: 46  FLTKKQASEPALAADWAKLEELYNKKLWHQLTLKLQEFVKNPALQRGDNLIQLYNNFLTT 225
           ++  ++ + P LA  +A L +LY +KLWHQLTLKL  F++ PA Q GD +IQLYNNF++ 
Sbjct: 5   YVEAQRQARPDLADAYADLADLYQRKLWHQLTLKLDHFLQLPAAQTGDTIIQLYNNFISD 64

Query: 226 FESKINPLSLLRSLLIS 276
           FE+KIN L L    +I+
Sbjct: 65  FETKINLLKLAHFAVIA 81


>09_04_0469 +
           17864265-17864789,17865648-17865854,17865936-17866175,
           17866705-17866771,17866872-17867015,17867202-17867297,
           17867818-17867975,17868054-17868190,17868551-17868752
          Length = 591

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +1

Query: 115 NKKLWHQLTLKLQEFVKNPALQRGDNLIQLYNNFLTTFESKINPLSLLRS 264
           N K W Q+  +L  F+K     +G   ++ Y+N   +F S + P++   S
Sbjct: 178 NFKEWKQVLQELGRFLKADGAYKGSRSLR-YDNLFDSFPSNLAPIARFHS 226


>01_06_0317 + 28425408-28426079,28426286-28426351
          Length = 245

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -2

Query: 614 ISARSVAGRPHPRRRTQRTEALRGSTAVGPRT 519
           ++A + A RP   R  +R  + RGSTA  P T
Sbjct: 138 VAAAAAAARPWNLRERKRRPSARGSTAASPTT 169


>01_05_0624 + 23772613-23774671,23774737-23775596
          Length = 972

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
 Frame = +1

Query: 43   DFLTKKQASEPALAADWAKLEELYNKKL-WHQLTLKLQEFVKNPALQRGDNLIQLYNNFL 219
            DF + K +    +  +   L EL N  L W+QL   + + +    L +  +L   YN F 
Sbjct: 775  DFSSNKLSGH--IPKEIGSLVELVNLNLSWNQLAGNIPDQIGE--LHQLTSLDLSYNQFS 830

Query: 220  TTFESKINPLSLLRSLLISWNSMSTR 297
                S ++ L+ L  L +S+N++S R
Sbjct: 831  GEIPSSLSNLTFLSYLNLSYNNLSGR 856


>05_05_0253 - 23632907-23633646,23633758-23635050,23636471-23636663
          Length = 741

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +2

Query: 503 ASNITESVVPLPYYRAALRYVGCADG 580
           +S++++S  P+P  R    Y+GCADG
Sbjct: 558 SSDLSDSGGPIPTVRTFQWYLGCADG 583


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,591,787
Number of Sequences: 37544
Number of extensions: 361812
Number of successful extensions: 966
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 937
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 966
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)