Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060282.seq
         (678 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46121| Best HMM Match : Cornifin (HMM E-Value=0.47)                 31   0.65 
SB_16000| Best HMM Match : Gal-3-0_sulfotr (HMM E-Value=5.5e-14)       30   2.0  
SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_48887| Best HMM Match : PA28_alpha (HMM E-Value=6.2)                29   3.5  
SB_59515| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2e-31)        29   4.6  
SB_12127| Best HMM Match : Endonuclease_NS (HMM E-Value=2.9e-35)       29   4.6  
SB_29054| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  

>SB_46121| Best HMM Match : Cornifin (HMM E-Value=0.47)
          Length = 239

 Score = 31.5 bits (68), Expect = 0.65
 Identities = 18/61 (29%), Positives = 29/61 (47%)
 Frame = -3

Query: 379 CSTLHRASASSFILTFVSTFSRNVTASLLLTYCSTI*AMISTMIGDLFCFRRWSKSYCTT 200
           CST+     S+ +  + ST   +   ++L  YC+TI     T I   +C    +  YCTT
Sbjct: 105 CSTILTDYCSTILTDYCSTILTDYCTTILTDYCTTILTDYCTTILTDYCTTILT-DYCTT 163

Query: 199 V 197
           +
Sbjct: 164 I 164



 Score = 30.7 bits (66), Expect = 1.1
 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = -3

Query: 379 CSTLHRASASSFILTFVSTFSRNVTASLLLTYCSTI*A-MISTMIGDLFCFRRWSKSYCT 203
           CST+     S+ +  + +T   +   ++L  YCSTI     ST++ D +C    +  YCT
Sbjct: 73  CSTILTDYCSTILTDYCTTILTDYCTTILTDYCSTILTDYCSTILTD-YCSTILT-DYCT 130

Query: 202 TV 197
           T+
Sbjct: 131 TI 132



 Score = 30.7 bits (66), Expect = 1.1
 Identities = 17/61 (27%), Positives = 30/61 (49%)
 Frame = -3

Query: 379 CSTLHRASASSFILTFVSTFSRNVTASLLLTYCSTI*AMISTMIGDLFCFRRWSKSYCTT 200
           C+T+     ++ +  + ST   +  +++L  YCSTI     T I   +C    +  YCTT
Sbjct: 89  CTTILTDYCTTILTDYCSTILTDYCSTILTDYCSTILTDYCTTILTDYCTTILT-DYCTT 147

Query: 199 V 197
           +
Sbjct: 148 I 148



 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/61 (27%), Positives = 28/61 (45%)
 Frame = -3

Query: 379 CSTLHRASASSFILTFVSTFSRNVTASLLLTYCSTI*AMISTMIGDLFCFRRWSKSYCTT 200
           C+T+     S+ +  + ST       ++L  YC+TI     T I   +C    +  YCTT
Sbjct: 169 CTTILTDHCSTILTDYCSTILTGYCTTILTDYCTTILTDYCTTILTDYCTTILT-DYCTT 227

Query: 199 V 197
           +
Sbjct: 228 I 228



 Score = 28.7 bits (61), Expect = 4.6
 Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = -3

Query: 379 CSTLHRASASSFILTFVSTFSRNVTASLLLTYCSTI*A-MISTMIGDLFCFRRWSKSYCT 203
           C+T+     S+ +  + ST   +   ++L  YC+TI     ST++ D +C    +  YC+
Sbjct: 17  CTTILTDYCSTILTDYCSTILTDYCTTILTDYCTTILTDYCSTILTD-YCITILT-DYCS 74

Query: 202 TV 197
           T+
Sbjct: 75  TI 76



 Score = 28.7 bits (61), Expect = 4.6
 Identities = 16/61 (26%), Positives = 30/61 (49%)
 Frame = -3

Query: 379 CSTLHRASASSFILTFVSTFSRNVTASLLLTYCSTI*AMISTMIGDLFCFRRWSKSYCTT 200
           C+T+     ++ +  + +T   +  +++L  YCSTI     T I   +C    +  YCTT
Sbjct: 153 CTTILTDYCTTILTDYCTTILTDHCSTILTDYCSTILTGYCTTILTDYCTTILT-DYCTT 211

Query: 199 V 197
           +
Sbjct: 212 I 212



 Score = 27.9 bits (59), Expect = 8.0
 Identities = 16/61 (26%), Positives = 29/61 (47%)
 Frame = -3

Query: 379 CSTLHRASASSFILTFVSTFSRNVTASLLLTYCSTI*AMISTMIGDLFCFRRWSKSYCTT 200
           C+T+     S+ +  +  T   +  +++L  YCSTI     T I   +C    +  YC+T
Sbjct: 49  CTTILTDYCSTILTDYCITILTDYCSTILTDYCSTILTDYCTTILTDYCTTILT-DYCST 107

Query: 199 V 197
           +
Sbjct: 108 I 108


>SB_16000| Best HMM Match : Gal-3-0_sulfotr (HMM E-Value=5.5e-14)
          Length = 628

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
 Frame = +1

Query: 64  ASEPALAADWAK----LEELYNKKLWHQLTLKLQEFVKNPALQR 183
           +SE A   +W+K    L E +NK LW +++ +  EF K+ A+ R
Sbjct: 525 SSEKAALKNWSKADVALYEYFNKTLWQRISYEEPEFSKDLAVFR 568


>SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 697

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/41 (31%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
 Frame = +3

Query: 375 LQGQIYIEQLNDYDAAEKIIE--HLESHSKMLMV*LQFTDD 491
           ++G + +E+LNDY   +K+IE   +E   K++   ++  DD
Sbjct: 28  MEGFVSLEELNDYTLEKKVIEGGRMEGEGKIMSFSIKTPDD 68


>SB_48887| Best HMM Match : PA28_alpha (HMM E-Value=6.2)
          Length = 159

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 11/35 (31%), Positives = 24/35 (68%)
 Frame = +2

Query: 470 VTPVHGRFYKLASNITESVVPLPYYRAALRYVGCA 574
           ++PV+ R   +++N++E +    ++ AALR+ GC+
Sbjct: 58  LSPVYFRRPPISNNVSEGIRVTTHHLAALRFCGCS 92


>SB_59515| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2e-31)
          Length = 2122

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 22/84 (26%), Positives = 42/84 (50%)
 Frame = +3

Query: 153 RIRQESGPAEGRQPHTVVQ*LFDHLRKQNKSPIIVEIIAHIVEQYVNKRDAVTFLEKVET 332
           R+  + G ++ + P  +V+ L D         I+ ++I+   EQ V+K+   +  E+V T
Sbjct: 42  RLHNKIGSSQAKWP-ILVRLLSDCQTLVRPPSIMSKVISSSHEQVVSKKVITSSHEQVIT 100

Query: 333 KVKMNDEALALCKVLQGQIYIEQL 404
             +  D+A+   KVL+  +  E L
Sbjct: 101 LKREYDDAVVAKKVLESLLSAEHL 124


>SB_12127| Best HMM Match : Endonuclease_NS (HMM E-Value=2.9e-35)
          Length = 1577

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 8/22 (36%), Positives = 17/22 (77%)
 Frame = +3

Query: 327 ETKVKMNDEALALCKVLQGQIY 392
           +T++++N+E +  CK+L G +Y
Sbjct: 758 QTRIRINEEVVLACKLLNGHLY 779


>SB_29054| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 515

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 18/66 (27%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
 Frame = +3

Query: 276 VEQYVNKRDAVTF-LEKVETKVKMNDEALALCKVLQGQIYIEQLNDYDAAEKIIEHLESH 452
           +E+Y  +R+   F L +V+  ++ N  A  +  + +GQ   +Q++ Y++A+KIIE     
Sbjct: 157 LERYNARREVADFQLFQVKDHIEENHLAKDM-DMQEGQNIKQQVDMYESAKKIIEEQRRQ 215

Query: 453 SKMLMV 470
            K+ ++
Sbjct: 216 EKIQLM 221


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,263,172
Number of Sequences: 59808
Number of extensions: 418499
Number of successful extensions: 1143
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1036
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1130
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)