Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060282.seq
(678 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z49130-6|CAA88971.1| 387|Caenorhabditis elegans Hypothetical pr... 64 1e-10
Z81098-3|CAB03179.1| 131|Caenorhabditis elegans Hypothetical pr... 30 1.7
U39678-10|AAV28360.1| 436|Caenorhabditis elegans Hypothetical p... 29 3.0
U41036-4|AAT92061.1| 1018|Caenorhabditis elegans Hypothetical pr... 29 4.0
U41036-3|AAL06055.1| 1030|Caenorhabditis elegans Hypothetical pr... 29 4.0
U41036-2|AAA82385.2| 1086|Caenorhabditis elegans Hypothetical pr... 29 4.0
Z83318-7|CAL63994.1| 204|Caenorhabditis elegans Hypothetical pr... 28 5.3
U50066-2|AAA93438.2| 202|Caenorhabditis elegans Hypothetical pr... 28 5.3
AC024791-24|AAF60656.1| 627|Caenorhabditis elegans Hypothetical... 28 5.3
>Z49130-6|CAA88971.1| 387|Caenorhabditis elegans Hypothetical
protein T06D8.8 protein.
Length = 387
Score = 63.7 bits (148), Expect = 1e-10
Identities = 30/87 (34%), Positives = 50/87 (57%), Gaps = 1/87 (1%)
Frame = +1
Query: 43 DFLTKK-QASEPALAADWAKLEELYNKKLWHQLTLKLQEFVKNPALQRGDNLIQLYNNFL 219
D+L K A+ LA DW L+EL+ KKLWHQLT+ + VK P ++ + Y F+
Sbjct: 5 DYLNGKLAAANGPLADDWKNLKELWEKKLWHQLTVLTRSLVKKPQFVASTDMHEFYRLFV 64
Query: 220 TTFESKINPLSLLRSLLISWNSMSTRE 300
+E ++NPL L+ + +++T++
Sbjct: 65 AEWELRVNPLQLVEICISIAQNIATKD 91
Score = 35.1 bits (77), Expect = 0.046
Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +2
Query: 467 GVTPVHGRFYKLASNITESVVPLP-YYRAALRYVGCAD 577
GVT VH FY+++S V YYR ALRY+G D
Sbjct: 156 GVTEVHAPFYRVSSLYLREVGDFAGYYREALRYLGVED 193
>Z81098-3|CAB03179.1| 131|Caenorhabditis elegans Hypothetical
protein K07A12.3 protein.
Length = 131
Score = 29.9 bits (64), Expect = 1.7
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +1
Query: 58 KQASEPALAADWAKLEELYNKKLWHQLTLK 147
+ A PA+ ADWAKL++ K + L++K
Sbjct: 46 RSADIPAIKADWAKLQKFIETKQYVNLSIK 75
>U39678-10|AAV28360.1| 436|Caenorhabditis elegans Hypothetical
protein C39D10.11 protein.
Length = 436
Score = 29.1 bits (62), Expect = 3.0
Identities = 22/71 (30%), Positives = 36/71 (50%)
Frame = -2
Query: 356 CFIIHFNFRFHLLKECDSISLVDILFHDMSNDLNNDRGFILLSKVVKKLLYNCMRLSPLC 177
CFI + F LLK + S FH M+ LN+D+ ++ V K++ + +R+ PL
Sbjct: 60 CFI-NGRFLLGLLKSHEDNS-----FHLMTISLNHDQTCTVIKHVPTKIISHGLRVRPLI 113
Query: 176 RAGFLTNSCNF 144
+ + S NF
Sbjct: 114 VSHYSPASINF 124
>U41036-4|AAT92061.1| 1018|Caenorhabditis elegans Hypothetical
protein T14E8.1c protein.
Length = 1018
Score = 28.7 bits (61), Expect = 4.0
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 273 IVEQYVNKRDAVTFLEKVETKVKMND 350
I+ +Y+ K D +F+E VE +KM D
Sbjct: 809 IITEYMAKGDLKSFIENVENTIKMRD 834
>U41036-3|AAL06055.1| 1030|Caenorhabditis elegans Hypothetical
protein T14E8.1b protein.
Length = 1030
Score = 28.7 bits (61), Expect = 4.0
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 273 IVEQYVNKRDAVTFLEKVETKVKMND 350
I+ +Y+ K D +F+E VE +KM D
Sbjct: 809 IITEYMAKGDLKSFIENVENTIKMRD 834
>U41036-2|AAA82385.2| 1086|Caenorhabditis elegans Hypothetical
protein T14E8.1a protein.
Length = 1086
Score = 28.7 bits (61), Expect = 4.0
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 273 IVEQYVNKRDAVTFLEKVETKVKMND 350
I+ +Y+ K D +F+E VE +KM D
Sbjct: 809 IITEYMAKGDLKSFIENVENTIKMRD 834
>Z83318-7|CAL63994.1| 204|Caenorhabditis elegans Hypothetical
protein F55B11.7 protein.
Length = 204
Score = 28.3 bits (60), Expect = 5.3
Identities = 18/72 (25%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Frame = +3
Query: 219 DHLRKQNKSPIIVEIIAHI--VEQYVNKR----DAVTFLEKVETKVKMNDEALALCKVLQ 380
++L N +P+I + A++ V ++NK+ + TFL +E + ++ E LA CK
Sbjct: 40 EYLDLYNFNPVIHDTEANVLGVRMFLNKKIIALQSPTFLALIENQTVLSSEQLANCKFED 99
Query: 381 GQIYIEQLNDYD 416
+++ ++ D
Sbjct: 100 IHDFLQLIHGVD 111
>U50066-2|AAA93438.2| 202|Caenorhabditis elegans Hypothetical
protein T14A8.2 protein.
Length = 202
Score = 28.3 bits (60), Expect = 5.3
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = -2
Query: 626 SLKXISARSVAGRPHPRRRTQRTEALRGSTA-VGPRTL*YSRLTYKIVRELESHHQH 459
+L ISA + H R +TEA+ G+TA +GP ++ + E E HH+H
Sbjct: 40 ALLAISALASPSLRHERAPGPQTEAIDGTTAELGPGDDTPAQFEEEASGEEEDHHEH 96
>AC024791-24|AAF60656.1| 627|Caenorhabditis elegans Hypothetical
protein Y47G6A.4 protein.
Length = 627
Score = 28.3 bits (60), Expect = 5.3
Identities = 15/32 (46%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Frame = +3
Query: 168 SGPAEGRQPHTVVQ*LFDHLRKQN-KSPIIVE 260
+GPA+G +P+ V + L HL KQ+ KSPI+ +
Sbjct: 279 NGPADGCEPYEVFEWL-QHLLKQHPKSPILCD 309
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,920,887
Number of Sequences: 27780
Number of extensions: 311009
Number of successful extensions: 907
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 906
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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