Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060281.seq
(580 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 213 9e-56
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 208 2e-54
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 208 2e-54
SB_56| Best HMM Match : Actin (HMM E-Value=0) 207 6e-54
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 206 1e-53
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 115 3e-26
SB_54| Best HMM Match : Actin (HMM E-Value=0) 90 1e-18
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 87 1e-17
SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40) 76 2e-14
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 64 1e-10
SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6) 46 2e-05
SB_3885| Best HMM Match : Actin (HMM E-Value=0.77) 45 4e-05
SB_28400| Best HMM Match : PMSR (HMM E-Value=1.7e-24) 40 0.002
SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12) 38 0.004
SB_10917| Best HMM Match : SPRY (HMM E-Value=1.4e-17) 33 0.17
SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011) 32 0.29
SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.51
SB_13911| Best HMM Match : PAN (HMM E-Value=0.033) 31 0.90
SB_10843| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.2
SB_717| Best HMM Match : Glyco_hydro_63 (HMM E-Value=0.00015) 30 1.2
SB_24041| Best HMM Match : rve (HMM E-Value=9.7e-08) 29 3.6
SB_39538| Best HMM Match : VWA (HMM E-Value=0) 28 4.8
SB_47550| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_30356| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_54652| Best HMM Match : Retrotrans_gag (HMM E-Value=0.52) 27 8.4
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 27 8.4
SB_13096| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.4
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 213 bits (520), Expect = 9e-56
Identities = 109/154 (70%), Positives = 114/154 (74%)
Frame = +3
Query: 72 MCDEEVAALVVDNGSGMXKAGFARR*CSSRRVPLDRGXAPPSGRDGRYGTEGLLCRR*GT 251
MCD++VAALVVDNGSGM KAGFA P G G G +
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 252 EKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEXPLNPKANREKM 431
KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE PLNPKANREKM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 432 TQIMFETFNTXAMYVAIQAVLSLYAXVVPTGIVL 533
TQIMFETFN+ AMYVAIQAVLSLYA TGIV+
Sbjct: 121 TQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVM 154
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 208 bits (509), Expect = 2e-54
Identities = 108/154 (70%), Positives = 113/154 (73%)
Frame = +3
Query: 72 MCDEEVAALVVDNGSGMXKAGFARR*CSSRRVPLDRGXAPPSGRDGRYGTEGLLCRR*GT 251
M D+E+AALVVDNGSGM KAGFA P G G G +
Sbjct: 1 MEDDEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 252 EKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEXPLNPKANREKM 431
KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE PLNPKANREKM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 432 TQIMFETFNTXAMYVAIQAVLSLYAXVVPTGIVL 533
TQIMFETFN+ AMYVAIQAVLSLYA TGIV+
Sbjct: 121 TQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVM 154
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 208 bits (509), Expect = 2e-54
Identities = 106/154 (68%), Positives = 113/154 (73%)
Frame = +3
Query: 72 MCDEEVAALVVDNGSGMXKAGFARR*CSSRRVPLDRGXAPPSGRDGRYGTEGLLCRR*GT 251
M D+++AALV+DNGSGM KAGFA P G G G +
Sbjct: 1 MADDDIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 252 EKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEXPLNPKANREKM 431
KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE PLNPKANREKM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 432 TQIMFETFNTXAMYVAIQAVLSLYAXVVPTGIVL 533
TQIMFETFN+ AMYVAIQAVLSLYA TGIV+
Sbjct: 121 TQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVM 154
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 207 bits (505), Expect = 6e-54
Identities = 107/152 (70%), Positives = 112/152 (73%)
Frame = +3
Query: 78 DEEVAALVVDNGSGMXKAGFARR*CSSRRVPLDRGXAPPSGRDGRYGTEGLLCRR*GTEK 257
++EVAALVVDNGSGM KAGFA P G G G + K
Sbjct: 2 EDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 258 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEXPLNPKANREKMTQ 437
RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE PLNPKANREKMTQ
Sbjct: 62 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 121
Query: 438 IMFETFNTXAMYVAIQAVLSLYAXVVPTGIVL 533
IMFETFN+ AMYVAIQAVLSLYA TGIV+
Sbjct: 122 IMFETFNSPAMYVAIQAVLSLYASGRTTGIVM 153
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 206 bits (502), Expect = 1e-53
Identities = 106/152 (69%), Positives = 112/152 (73%)
Frame = +3
Query: 78 DEEVAALVVDNGSGMXKAGFARR*CSSRRVPLDRGXAPPSGRDGRYGTEGLLCRR*GTEK 257
+++VAALVVDNGSGM KAGFA P G G G + K
Sbjct: 2 EDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 258 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEXPLNPKANREKMTQ 437
RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE PLNPKANREKMTQ
Sbjct: 62 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 121
Query: 438 IMFETFNTXAMYVAIQAVLSLYAXVVPTGIVL 533
IMFETFN+ AMYVAIQAVLSLYA TGIV+
Sbjct: 122 IMFETFNSPAMYVAIQAVLSLYASGRTTGIVM 153
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 115 bits (276), Expect = 3e-26
Identities = 59/151 (39%), Positives = 91/151 (60%), Gaps = 3/151 (1%)
Frame = +3
Query: 90 AALVVDNGSGMXKAGFARR*CSSRRVP--LDRGXAPPSGRDGRYGTEGLLCRR*GTEKRG 263
+ +V DNG+G K G+A + P + R S + G + L+ ++ R
Sbjct: 7 SVIVCDNGTGFVKCGYAGSNFPAHIFPSMVGRPIIRSSQKVGDIEVKDLMVGDEASQLRY 66
Query: 264 ILTLKYPIEHGIVTNWDDMEKIWHHTF-YNELRVAPEEHPVLLTEXPLNPKANREKMTQI 440
+L + YP+++GIV NWDDM+ +W +TF +++ + P VLLTE PLNP NREKM ++
Sbjct: 67 MLEVNYPMDNGIVRNWDDMKHVWDYTFGESKMNIDPRNTKVLLTEPPLNPMKNREKMIEV 126
Query: 441 MFETFNTXAMYVAIQAVLSLYAXVVPTGIVL 533
MFE + +Y+AIQAVL+LYA + TG+V+
Sbjct: 127 MFENYQFEGVYIAIQAVLTLYAQGLLTGVVI 157
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 89.8 bits (213), Expect = 1e-18
Identities = 42/69 (60%), Positives = 52/69 (75%)
Frame = +3
Query: 324 KIWHHTFYNELRVAPEEHPVLLTEXPLNPKANREKMTQIMFETFNTXAMYVAIQAVLSLY 503
K+W H F ++LRV E+ PVLLTE PLNPK NRE+M Q+MFE+FN MYVA+QAV++LY
Sbjct: 2130 KMWEHAF-DQLRVRGEDFPVLLTEAPLNPKMNRERMVQLMFESFNVPCMYVAVQAVMALY 2188
Query: 504 AXVVPTGIV 530
A TG V
Sbjct: 2189 ASGRTTGTV 2197
Score = 33.5 bits (73), Expect = 0.13
Identities = 12/18 (66%), Positives = 16/18 (88%)
Frame = +1
Query: 145 DDAPRAVFPSIVGXPRHQ 198
D++PR VFP+IVG PRH+
Sbjct: 2113 DESPRVVFPAIVGRPRHK 2130
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 86.6 bits (205), Expect = 1e-17
Identities = 48/89 (53%), Positives = 52/89 (58%)
Frame = +3
Query: 78 DEEVAALVVDNGSGMXKAGFARR*CSSRRVPLDRGXAPPSGRDGRYGTEGLLCRR*GTEK 257
D++VAALV+DNGSGM KAGFA P G G G + K
Sbjct: 2 DDDVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 258 RGILTLKYPIEHGIVTNWDDMEKIWHHTF 344
RGILTLKYPIEHGIVTNWDDMEKI TF
Sbjct: 62 RGILTLKYPIEHGIVTNWDDMEKIMFETF 90
Score = 82.2 bits (194), Expect = 3e-16
Identities = 37/39 (94%), Positives = 37/39 (94%)
Frame = +1
Query: 142 GDDAPRAVFPSIVGXPRHQGVMVGMGQKDSYVGDEAQRK 258
GDDAPRAVFPSIVG PRHQGVMVGMGQKDSYVGDEAQ K
Sbjct: 23 GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Score = 53.6 bits (123), Expect = 1e-07
Identities = 27/39 (69%), Positives = 31/39 (79%)
Frame = +3
Query: 417 NREKMTQIMFETFNTXAMYVAIQAVLSLYAXVVPTGIVL 533
N + M +IMFETFN+ AMYVAIQAVLSLYA TGIV+
Sbjct: 78 NWDDMEKIMFETFNSPAMYVAIQAVLSLYASGRTTGIVM 116
>SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)
Length = 367
Score = 76.2 bits (179), Expect = 2e-14
Identities = 33/54 (61%), Positives = 43/54 (79%)
Frame = +3
Query: 372 EHPVLLTEXPLNPKANREKMTQIMFETFNTXAMYVAIQAVLSLYAXVVPTGIVL 533
+HPVLLTE PLNP+ NREK ++ FETFN A+++++QAVLSLYA TG+VL
Sbjct: 126 QHPVLLTEAPLNPRRNREKAAEVFFETFNVPALFISMQAVLSLYATGRTTGVVL 179
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 63.7 bits (148), Expect = 1e-10
Identities = 27/84 (32%), Positives = 50/84 (59%)
Frame = +3
Query: 282 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEXPLNPKANREKMTQIMFETFNT 461
PI+ G++ +WD EKI + + ++ HP+L++E N + REK+T++MFE +N
Sbjct: 3 PIKDGMIEDWDLFEKILDYIYSKNIKSDSALHPLLMSEAAWNTRIKREKLTELMFEKYNV 62
Query: 462 XAMYVAIQAVLSLYAXVVPTGIVL 533
A ++ +VL+ +A G+V+
Sbjct: 63 PAFFLCKNSVLTAFANGRSNGLVI 86
>SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6)
Length = 372
Score = 46.0 bits (104), Expect = 2e-05
Identities = 18/38 (47%), Positives = 23/38 (60%)
Frame = +3
Query: 276 KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 389
K+PI H IV +WD ME+ W + LR PE+H LL
Sbjct: 299 KWPIRHAIVEDWDLMERFWEQCIFKYLRAEPEDHYFLL 336
>SB_3885| Best HMM Match : Actin (HMM E-Value=0.77)
Length = 152
Score = 45.2 bits (102), Expect = 4e-05
Identities = 22/31 (70%), Positives = 25/31 (80%)
Frame = +3
Query: 438 IMFETFNTXAMYVAIQAVLSLYAXVVPTGIV 530
IMFE FN+ A+YVAIQAVLSLYA TG+V
Sbjct: 1 IMFEAFNSPAVYVAIQAVLSLYASGRTTGVV 31
>SB_28400| Best HMM Match : PMSR (HMM E-Value=1.7e-24)
Length = 766
Score = 39.5 bits (88), Expect = 0.002
Identities = 20/68 (29%), Positives = 38/68 (55%)
Frame = +3
Query: 327 IWHHTFYNELRVAPEEHPVLLTEXPLNPKANREKMTQIMFETFNTXAMYVAIQAVLSLYA 506
I H F + L+V P +H V++T +E++ +I+ F A+Y+ Q++L++Y+
Sbjct: 513 ILEHAFLS-LKVDPVKHKVIMTIPQNTGLQEKEELVEILLGYFRVQAVYLQEQSILAMYS 571
Query: 507 XVVPTGIV 530
+GIV
Sbjct: 572 YSAVSGIV 579
>SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)
Length = 1392
Score = 38.3 bits (85), Expect = 0.004
Identities = 15/19 (78%), Positives = 16/19 (84%)
Frame = +1
Query: 142 GDDAPRAVFPSIVGXPRHQ 198
GDDAP+ VFP IVG PRHQ
Sbjct: 1374 GDDAPKGVFPPIVGRPRHQ 1392
>SB_10917| Best HMM Match : SPRY (HMM E-Value=1.4e-17)
Length = 635
Score = 33.1 bits (72), Expect = 0.17
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Frame = +3
Query: 156 SRRVPLDRGXAPPSGRDGRYGTEGLLCRR*GTEKRGILTLKYPIEHGIVTNW--DDMEKI 329
SR V L + +GR+ G+ +CR+ K ++TL + I G+ + D EK+
Sbjct: 438 SRPVTLSQNVVSVTGREESGGSGTQVCRK----KAPLITLSHVIRMGLALSLVSDVKEKV 493
Query: 330 WHHTFYN 350
W+HT N
Sbjct: 494 WYHTCPN 500
>SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)
Length = 580
Score = 32.3 bits (70), Expect = 0.29
Identities = 26/90 (28%), Positives = 39/90 (43%)
Frame = +3
Query: 84 EVAALVVDNGSGMXKAGFARR*CSSRRVPLDRGXAPPSGRDGRYGTEGLLCRR*GTEKRG 263
++A LV+D G+ K GFA + R +P A R G + C+
Sbjct: 232 KMATLVLDCGACSQKIGFASN-QAPRSIPNAIFKAKSERRKLFIGDQIEECK-----DYS 285
Query: 264 ILTLKYPIEHGIVTNWDDMEKIWHHTFYNE 353
L P + G + NWD ++IW +TF E
Sbjct: 286 ALFYVLPFQKGFLVNWDVEKQIWDYTFGKE 315
>SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 220
Score = 31.5 bits (68), Expect = 0.51
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +3
Query: 273 LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP--EEHPVLLTEXPLNPKANRE 425
L+ P + +VT+++ E++ H F + P HPV++TE NP R+
Sbjct: 131 LRTPFDRDVVTHYECQEQVLDHAFSHLGINTPGGVNHPVIMTEPVCNPNYCRQ 183
>SB_13911| Best HMM Match : PAN (HMM E-Value=0.033)
Length = 534
Score = 30.7 bits (66), Expect = 0.90
Identities = 12/39 (30%), Positives = 25/39 (64%)
Frame = +3
Query: 414 ANREKMTQIMFETFNTXAMYVAIQAVLSLYAXVVPTGIV 530
A +E++ +I+ F A+Y+ Q++L++Y+ +GIV
Sbjct: 420 AKKEELVEILLGYFRVQAVYLQEQSILAMYSYSAVSGIV 458
>SB_10843| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1259
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +2
Query: 398 SPQPQGQQREDDPDHVRNIQHARHVRRHPSR 490
SP P+ R D+P V A HV HPSR
Sbjct: 265 SPTPKRCVRFDEPPTVEKYSKASHVTEHPSR 295
>SB_717| Best HMM Match : Glyco_hydro_63 (HMM E-Value=0.00015)
Length = 1052
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -1
Query: 529 TIPVGTTXAYSESTAWMATYMAXVLNVS 446
T+P G ++ TAWMA Y +LN+S
Sbjct: 664 TLPGGGRLCQADGTAWMALYCIVMLNIS 691
>SB_24041| Best HMM Match : rve (HMM E-Value=9.7e-08)
Length = 399
Score = 28.7 bits (61), Expect = 3.6
Identities = 19/59 (32%), Positives = 23/59 (38%), Gaps = 5/59 (8%)
Frame = -1
Query: 247 PHLLHKSPSVPYRPSRPDGGAXPRSRGTRREEHHL-----LAKPAXHIPEPLSTTNAAT 86
P L P P ++ G R+R R HH L P +P PL NAAT
Sbjct: 315 PSLTPFEPGQPVVCNQETEGVYRRTRSQLRPHHHFAPDESLNAPKPDVPTPLDIPNAAT 373
>SB_39538| Best HMM Match : VWA (HMM E-Value=0)
Length = 3208
Score = 28.3 bits (60), Expect = 4.8
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = +2
Query: 431 DPDHVRNIQHARHVRRHPSRALAVRVGRTNRYRAWTPATVFSHTVAHSNE 580
DP +RN+Q + + PSR V G+ + + + TP ++ H V+ NE
Sbjct: 3084 DPKRLRNLQTTINPLKQPSRLALVMEGKKSDH-SMTPKSI-GHEVSTPNE 3131
>SB_47550| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 253
Score = 27.9 bits (59), Expect = 6.3
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +2
Query: 485 SRALAVRVGRTNRYRAWTPATVFSHTVAHSNE 580
S A R + + R PATVFS AHS+E
Sbjct: 70 SAVWASRTSKAEKMRKHIPATVFSFRDAHSDE 101
>SB_30356| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 531
Score = 27.9 bits (59), Expect = 6.3
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -1
Query: 172 RGTRREEHHLLAKPAXHIPEPLSTTNAATSSSH 74
RG RR+ L A+P P S AAT+ +H
Sbjct: 220 RGPRRQSKPLAARPGTSFPSGTSAPVAATAHTH 252
>SB_54652| Best HMM Match : Retrotrans_gag (HMM E-Value=0.52)
Length = 721
Score = 27.5 bits (58), Expect = 8.4
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -1
Query: 232 KSPSVPYRPSRPDGGAXPRSRGTRREEHHLLAKPAXHIPEP 110
+S S P P RPD + ++R++ HL+ K PEP
Sbjct: 218 RSKSTPNAPPRPDKWTSKSASKSKRQQLHLMEKAG---PEP 255
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 27.5 bits (58), Expect = 8.4
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +3
Query: 66 FKMCDEEVAALVVDNGSGMXKAGFA 140
FK+ A+V+DNG G+ K GFA
Sbjct: 693 FKLDSHYNRAIVLDNGCGISKIGFA 717
Score = 27.5 bits (58), Expect = 8.4
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +1
Query: 142 GDDAPRAVFPSIVGXPRHQGVMVG 213
GD PR + P++VG P+ +++G
Sbjct: 718 GDRVPRIIQPAVVGNPQRFSMLIG 741
>SB_13096| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1465
Score = 27.5 bits (58), Expect = 8.4
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +2
Query: 467 HVRRHPSRALAVRVGRTNRYRAWTPAT 547
H P R + +R + +R RAWTP T
Sbjct: 1417 HAGLTPQRPVCIRYPQESRGRAWTPLT 1443
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,072,318
Number of Sequences: 59808
Number of extensions: 420299
Number of successful extensions: 1532
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 1357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1513
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1385833362
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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