Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060281.seq
(580 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical pr... 216 8e-57
Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical pr... 216 8e-57
X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein. 216 8e-57
X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein. 216 8e-57
X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein. 216 8e-57
U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4... 216 8e-57
Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical pr... 215 1e-56
X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein. 214 4e-56
Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical pr... 206 9e-54
U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4... 185 2e-47
U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4... 185 2e-47
AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical... 137 6e-33
Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical pr... 122 2e-28
AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 comple... 97 6e-21
J01044-1|AAA27889.1| 86|Caenorhabditis elegans protein ( C.ele... 90 9e-19
J01042-1|AAA27887.1| 86|Caenorhabditis elegans protein ( C.ele... 90 9e-19
J01046-1|AAA27890.1| 86|Caenorhabditis elegans protein ( C.ele... 89 2e-18
J01043-1|AAA27888.1| 83|Caenorhabditis elegans protein ( C.ele... 83 1e-16
AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical ... 71 5e-13
Z46676-5|CAA86667.3| 418|Caenorhabditis elegans Hypothetical pr... 38 0.007
U24189-2|AAC47513.1| 418|Caenorhabditis elegans actin-related p... 38 0.007
U40799-8|AAA81487.1| 552|Caenorhabditis elegans Hypothetical pr... 33 0.19
Z82258-1|CAB05122.2| 906|Caenorhabditis elegans Hypothetical pr... 31 0.59
AL132898-14|CAC14406.1| 1641|Caenorhabditis elegans Hypothetical... 27 7.3
Z73906-10|CAB54209.1| 530|Caenorhabditis elegans Hypothetical p... 27 9.6
Z73906-9|CAA98121.1| 571|Caenorhabditis elegans Hypothetical pr... 27 9.6
>Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.6 protein.
Length = 376
Score = 216 bits (528), Expect = 8e-57
Identities = 111/154 (72%), Positives = 114/154 (74%)
Frame = +3
Query: 72 MCDEEVAALVVDNGSGMXKAGFARR*CSSRRVPLDRGXAPPSGRDGRYGTEGLLCRR*GT 251
MCD+EVAALVVDNGSGM KAGFA P G G G +
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 252 EKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEXPLNPKANREKM 431
KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE PLNPKANREKM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 432 TQIMFETFNTXAMYVAIQAVLSLYAXVVPTGIVL 533
TQIMFETFNT AMYVAIQAVLSLYA TG+VL
Sbjct: 121 TQIMFETFNTPAMYVAIQAVLSLYASGRTTGVVL 154
>Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.4 protein.
Length = 376
Score = 216 bits (528), Expect = 8e-57
Identities = 111/154 (72%), Positives = 114/154 (74%)
Frame = +3
Query: 72 MCDEEVAALVVDNGSGMXKAGFARR*CSSRRVPLDRGXAPPSGRDGRYGTEGLLCRR*GT 251
MCD+EVAALVVDNGSGM KAGFA P G G G +
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 252 EKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEXPLNPKANREKM 431
KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE PLNPKANREKM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 432 TQIMFETFNTXAMYVAIQAVLSLYAXVVPTGIVL 533
TQIMFETFNT AMYVAIQAVLSLYA TG+VL
Sbjct: 121 TQIMFETFNTPAMYVAIQAVLSLYASGRTTGVVL 154
>X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 216 bits (528), Expect = 8e-57
Identities = 111/154 (72%), Positives = 114/154 (74%)
Frame = +3
Query: 72 MCDEEVAALVVDNGSGMXKAGFARR*CSSRRVPLDRGXAPPSGRDGRYGTEGLLCRR*GT 251
MCD+EVAALVVDNGSGM KAGFA P G G G +
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 252 EKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEXPLNPKANREKM 431
KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE PLNPKANREKM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 432 TQIMFETFNTXAMYVAIQAVLSLYAXVVPTGIVL 533
TQIMFETFNT AMYVAIQAVLSLYA TG+VL
Sbjct: 121 TQIMFETFNTPAMYVAIQAVLSLYASGRTTGVVL 154
>X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein.
Length = 375
Score = 216 bits (528), Expect = 8e-57
Identities = 111/154 (72%), Positives = 114/154 (74%)
Frame = +3
Query: 72 MCDEEVAALVVDNGSGMXKAGFARR*CSSRRVPLDRGXAPPSGRDGRYGTEGLLCRR*GT 251
MCD+EVAALVVDNGSGM KAGFA P G G G +
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 252 EKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEXPLNPKANREKM 431
KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE PLNPKANREKM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 432 TQIMFETFNTXAMYVAIQAVLSLYAXVVPTGIVL 533
TQIMFETFNT AMYVAIQAVLSLYA TG+VL
Sbjct: 121 TQIMFETFNTPAMYVAIQAVLSLYASGRTTGVVL 154
>X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 216 bits (528), Expect = 8e-57
Identities = 111/154 (72%), Positives = 114/154 (74%)
Frame = +3
Query: 72 MCDEEVAALVVDNGSGMXKAGFARR*CSSRRVPLDRGXAPPSGRDGRYGTEGLLCRR*GT 251
MCD+EVAALVVDNGSGM KAGFA P G G G +
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 252 EKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEXPLNPKANREKM 431
KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE PLNPKANREKM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 432 TQIMFETFNTXAMYVAIQAVLSLYAXVVPTGIVL 533
TQIMFETFNT AMYVAIQAVLSLYA TG+VL
Sbjct: 121 TQIMFETFNTPAMYVAIQAVLSLYASGRTTGVVL 154
>U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4,
isoform a protein.
Length = 376
Score = 216 bits (528), Expect = 8e-57
Identities = 111/154 (72%), Positives = 114/154 (74%)
Frame = +3
Query: 72 MCDEEVAALVVDNGSGMXKAGFARR*CSSRRVPLDRGXAPPSGRDGRYGTEGLLCRR*GT 251
MCD+EVAALVVDNGSGM KAGFA P G G G +
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 252 EKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEXPLNPKANREKM 431
KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE PLNPKANREKM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 432 TQIMFETFNTXAMYVAIQAVLSLYAXVVPTGIVL 533
TQIMFETFNT AMYVAIQAVLSLYA TG+VL
Sbjct: 121 TQIMFETFNTPAMYVAIQAVLSLYASGRTTGVVL 154
>Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.5 protein.
Length = 376
Score = 215 bits (526), Expect = 1e-56
Identities = 111/154 (72%), Positives = 114/154 (74%)
Frame = +3
Query: 72 MCDEEVAALVVDNGSGMXKAGFARR*CSSRRVPLDRGXAPPSGRDGRYGTEGLLCRR*GT 251
MCD++VAALVVDNGSGM KAGFA P G G G +
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 252 EKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEXPLNPKANREKM 431
KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE PLNPKANREKM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 432 TQIMFETFNTXAMYVAIQAVLSLYAXVVPTGIVL 533
TQIMFETFNT AMYVAIQAVLSLYA TGIVL
Sbjct: 121 TQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVL 154
>X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 214 bits (522), Expect = 4e-56
Identities = 109/154 (70%), Positives = 114/154 (74%)
Frame = +3
Query: 72 MCDEEVAALVVDNGSGMXKAGFARR*CSSRRVPLDRGXAPPSGRDGRYGTEGLLCRR*GT 251
MCD++VAAL++DNGSGM KAGFA P G G G +
Sbjct: 1 MCDDDVAALILDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 252 EKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEXPLNPKANREKM 431
KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE PLNPKANREKM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 432 TQIMFETFNTXAMYVAIQAVLSLYAXVVPTGIVL 533
TQIMFETFNT AMYVAIQAVLSLYA TGIVL
Sbjct: 121 TQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVL 154
>Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical
protein T25C8.2 protein.
Length = 375
Score = 206 bits (503), Expect = 9e-54
Identities = 106/152 (69%), Positives = 111/152 (73%)
Frame = +3
Query: 78 DEEVAALVVDNGSGMXKAGFARR*CSSRRVPLDRGXAPPSGRDGRYGTEGLLCRR*GTEK 257
+EE+AALVVDNGSGM KAGFA P G G G + K
Sbjct: 2 EEEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 258 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEXPLNPKANREKMTQ 437
RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELR+APEEHPVLLTE PLNPK+NREKMTQ
Sbjct: 62 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRIAPEEHPVLLTEAPLNPKSNREKMTQ 121
Query: 438 IMFETFNTXAMYVAIQAVLSLYAXVVPTGIVL 533
IMFETFNT AMYV IQAVLSLYA TGIVL
Sbjct: 122 IMFETFNTPAMYVNIQAVLSLYASGRTTGIVL 153
>U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4,
isoform b protein.
Length = 332
Score = 185 bits (450), Expect = 2e-47
Identities = 86/93 (92%), Positives = 87/93 (93%)
Frame = +3
Query: 255 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEXPLNPKANREKMT 434
KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE PLNPKANREKMT
Sbjct: 18 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 77
Query: 435 QIMFETFNTXAMYVAIQAVLSLYAXVVPTGIVL 533
QIMFETFNT AMYVAIQAVLSLYA TG+VL
Sbjct: 78 QIMFETFNTPAMYVAIQAVLSLYASGRTTGVVL 110
Score = 39.1 bits (87), Expect = 0.002
Identities = 17/18 (94%), Positives = 17/18 (94%)
Frame = +1
Query: 205 MVGMGQKDSYVGDEAQRK 258
MVGMGQKDSYVGDEAQ K
Sbjct: 1 MVGMGQKDSYVGDEAQSK 18
>U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4,
isoform c protein.
Length = 362
Score = 185 bits (450), Expect = 2e-47
Identities = 86/93 (92%), Positives = 87/93 (93%)
Frame = +3
Query: 255 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEXPLNPKANREKMT 434
KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE PLNPKANREKMT
Sbjct: 48 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 107
Query: 435 QIMFETFNTXAMYVAIQAVLSLYAXVVPTGIVL 533
QIMFETFNT AMYVAIQAVLSLYA TG+VL
Sbjct: 108 QIMFETFNTPAMYVAIQAVLSLYASGRTTGVVL 140
Score = 82.2 bits (194), Expect = 2e-16
Identities = 37/39 (94%), Positives = 37/39 (94%)
Frame = +1
Query: 142 GDDAPRAVFPSIVGXPRHQGVMVGMGQKDSYVGDEAQRK 258
GDDAPRAVFPSIVG PRHQGVMVGMGQKDSYVGDEAQ K
Sbjct: 10 GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 48
>AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical
protein Y53F4B.22 protein.
Length = 374
Score = 137 bits (331), Expect = 6e-33
Identities = 72/148 (48%), Positives = 94/148 (63%), Gaps = 2/148 (1%)
Frame = +3
Query: 96 LVVDNGSGMXKAGFARR*CSSRRVPLDRGXAPPSGRDGRYGTEG-LLCRR*GTEKRGILT 272
+V+DNGSG+ KAGFA R G P R G +G + RG+ +
Sbjct: 11 VVIDNGSGVIKAGFAGEQQPKVRFANFVGR-PKYHRVMAGGLDGDIFIGPKAESNRGLFS 69
Query: 273 LKYPIEHGIVTNWDDMEKIWHHTF-YNELRVAPEEHPVLLTEXPLNPKANREKMTQIMFE 449
++YP+EHGIV NW DMEKIW + F ++L++ PEEHPVLLT+ PLNP NRE+ +I FE
Sbjct: 70 IEYPMEHGIVNNWSDMEKIWEYIFGQDQLKIFPEEHPVLLTDAPLNPLKNRERSAEIFFE 129
Query: 450 TFNTXAMYVAIQAVLSLYAXVVPTGIVL 533
TFN A+Y+ +QAVLSLYA TG+VL
Sbjct: 130 TFNVPALYIQMQAVLSLYATGRTTGVVL 157
>Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical
protein K07C5.1 protein.
Length = 395
Score = 122 bits (293), Expect = 2e-28
Identities = 64/149 (42%), Positives = 93/149 (62%), Gaps = 3/149 (2%)
Frame = +3
Query: 96 LVVDNGSGMXKAGFARR*CSSRRVP--LDRGXAPPSGRDGRYGTEGLLCRR*GTEKRGIL 269
+VVDNG+G K G+A + P + R + R G + L+ ++ R +L
Sbjct: 9 IVVDNGTGFVKCGYAGTNFPAHIFPSMVGRPIVRSTQRVGNIEIKDLMVGEECSQLRQML 68
Query: 270 TLKYPIEHGIVTNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEXPLNPKANREKMTQIMF 446
+ YP+++GIV NWDDM +W HTF E L + P+E +LLTE PLNP +NREKM Q+MF
Sbjct: 69 DINYPMDNGIVRNWDDMAHVWDHTFGPEKLDIDPKECKLLLTEPPLNPNSNREKMFQVMF 128
Query: 447 ETFNTXAMYVAIQAVLSLYAXVVPTGIVL 533
E + ++YVA+QAVL+LYA + TG+V+
Sbjct: 129 EQYGFNSIYVAVQAVLTLYAQGLLTGVVV 157
>AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 complex
component protein 1 protein.
Length = 425
Score = 97.5 bits (232), Expect = 6e-21
Identities = 43/79 (54%), Positives = 54/79 (68%)
Frame = +3
Query: 270 TLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEXPLNPKANREKMTQIMFE 449
T+KYPI HGIV +WD ME+ W + LR PE+H LLTE PLN NRE +IMFE
Sbjct: 80 TVKYPIRHGIVEDWDLMERYWEQCIFKYLRAEPEDHFFLLTEPPLNTPENREYTAEIMFE 139
Query: 450 TFNTXAMYVAIQAVLSLYA 506
+FN +Y+A+QAVL+L A
Sbjct: 140 SFNVPGLYIAVQAVLALTA 158
>J01044-1|AAA27889.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene III, 5' end. ).
Length = 86
Score = 90.2 bits (214), Expect = 9e-19
Identities = 50/86 (58%), Positives = 52/86 (60%)
Frame = +3
Query: 72 MCDEEVAALVVDNGSGMXKAGFARR*CSSRRVPLDRGXAPPSGRDGRYGTEGLLCRR*GT 251
MCD+EVAALVVDNGSGM KAGFA P G G G +
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 252 EKRGILTLKYPIEHGIVTNWDDMEKI 329
KRGILTLKYPIEHGIVTNWDDMEKI
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKI 86
Score = 82.2 bits (194), Expect = 2e-16
Identities = 37/39 (94%), Positives = 37/39 (94%)
Frame = +1
Query: 142 GDDAPRAVFPSIVGXPRHQGVMVGMGQKDSYVGDEAQRK 258
GDDAPRAVFPSIVG PRHQGVMVGMGQKDSYVGDEAQ K
Sbjct: 24 GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 62
>J01042-1|AAA27887.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene I, 5' end. ).
Length = 86
Score = 90.2 bits (214), Expect = 9e-19
Identities = 50/86 (58%), Positives = 52/86 (60%)
Frame = +3
Query: 72 MCDEEVAALVVDNGSGMXKAGFARR*CSSRRVPLDRGXAPPSGRDGRYGTEGLLCRR*GT 251
MCD+EVAALVVDNGSGM KAGFA P G G G +
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 252 EKRGILTLKYPIEHGIVTNWDDMEKI 329
KRGILTLKYPIEHGIVTNWDDMEKI
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKI 86
Score = 82.2 bits (194), Expect = 2e-16
Identities = 37/39 (94%), Positives = 37/39 (94%)
Frame = +1
Query: 142 GDDAPRAVFPSIVGXPRHQGVMVGMGQKDSYVGDEAQRK 258
GDDAPRAVFPSIVG PRHQGVMVGMGQKDSYVGDEAQ K
Sbjct: 24 GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 62
>J01046-1|AAA27890.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene IV, 5' end. ).
Length = 86
Score = 89.0 bits (211), Expect = 2e-18
Identities = 49/86 (56%), Positives = 52/86 (60%)
Frame = +3
Query: 72 MCDEEVAALVVDNGSGMXKAGFARR*CSSRRVPLDRGXAPPSGRDGRYGTEGLLCRR*GT 251
MCD++VAALVVDNGSGM KAGFA P G G G +
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 252 EKRGILTLKYPIEHGIVTNWDDMEKI 329
KRGILTLKYPIEHGIVTNWDDMEKI
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKI 86
Score = 82.2 bits (194), Expect = 2e-16
Identities = 37/39 (94%), Positives = 37/39 (94%)
Frame = +1
Query: 142 GDDAPRAVFPSIVGXPRHQGVMVGMGQKDSYVGDEAQRK 258
GDDAPRAVFPSIVG PRHQGVMVGMGQKDSYVGDEAQ K
Sbjct: 24 GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 62
>J01043-1|AAA27888.1| 83|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene II, 5' end. ).
Length = 83
Score = 83.4 bits (197), Expect = 1e-16
Identities = 46/83 (55%), Positives = 49/83 (59%)
Frame = +3
Query: 72 MCDEEVAALVVDNGSGMXKAGFARR*CSSRRVPLDRGXAPPSGRDGRYGTEGLLCRR*GT 251
MCD++VAALVVDNGSGM KAGFA P G G G +
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 252 EKRGILTLKYPIEHGIVTNWDDM 320
KRGILTLKYPIEHGIVTNWDDM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDM 83
Score = 82.2 bits (194), Expect = 2e-16
Identities = 37/39 (94%), Positives = 37/39 (94%)
Frame = +1
Query: 142 GDDAPRAVFPSIVGXPRHQGVMVGMGQKDSYVGDEAQRK 258
GDDAPRAVFPSIVG PRHQGVMVGMGQKDSYVGDEAQ K
Sbjct: 24 GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 62
>AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical
protein ZK616.4 protein.
Length = 436
Score = 71.3 bits (167), Expect = 5e-13
Identities = 32/74 (43%), Positives = 47/74 (63%)
Frame = +3
Query: 285 IEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEXPLNPKANREKMTQIMFETFNTX 464
++ G++ +W+ EKI H++ N L P EHPVL +E N +A REK+T+IMFE F
Sbjct: 94 MKEGLIEDWELFEKIVEHSYENILYSNPSEHPVLFSESSWNDRARREKLTEIMFEKFQVP 153
Query: 465 AMYVAIQAVLSLYA 506
A Y++ VLS +A
Sbjct: 154 AYYLSKNVVLSCFA 167
>Z46676-5|CAA86667.3| 418|Caenorhabditis elegans Hypothetical
protein C08B11.6 protein.
Length = 418
Score = 37.5 bits (83), Expect = 0.007
Identities = 19/58 (32%), Positives = 29/58 (50%)
Frame = +3
Query: 282 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEXPLNPKANREKMTQIMFETF 455
PIE G V NWD ++IW TF + V + LT+ A + ++I+F+ F
Sbjct: 62 PIERGYVVNWDTQQQIWEKTF-GSMDVEASTSRIALTDNNYLIPALPDVSSEILFDYF 118
>U24189-2|AAC47513.1| 418|Caenorhabditis elegans actin-related
protein-like protein.
Length = 418
Score = 37.5 bits (83), Expect = 0.007
Identities = 19/58 (32%), Positives = 29/58 (50%)
Frame = +3
Query: 282 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEXPLNPKANREKMTQIMFETF 455
PIE G V NWD ++IW TF + V + LT+ A + ++I+F+ F
Sbjct: 62 PIERGYVVNWDTQQQIWEKTF-GSMDVEASTSRIALTDNNYLIPALPDVSSEILFDYF 118
>U40799-8|AAA81487.1| 552|Caenorhabditis elegans Hypothetical
protein F42C5.9 protein.
Length = 552
Score = 32.7 bits (71), Expect = 0.19
Identities = 22/71 (30%), Positives = 33/71 (46%)
Frame = +3
Query: 351 ELRVAPEEHPVLLTEXPLNPKANREKMTQIMFETFNTXAMYVAIQAVLSLYAXVVPTGIV 530
EL+V P ++ VLL+ P ++ QI E + + Q L LYA V TG+V
Sbjct: 266 ELKVEPWKYKVLLSIPQNIPTVLIGELLQICLEDIKFQSAGITRQPSLILYAYDVTTGVV 325
Query: 531 LGLRRRCFXTP 563
+ + R P
Sbjct: 326 VDIGERVNIVP 336
>Z82258-1|CAB05122.2| 906|Caenorhabditis elegans Hypothetical
protein C27H2.2a protein.
Length = 906
Score = 31.1 bits (67), Expect = 0.59
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Frame = -1
Query: 334 CQIFSMSSQLVTIPC-SMGYLRVRIPLFSVPHLLHKSPSVP-YRPSRPD 194
CQ+FS QLVT+ SMG +++++ + +P L KS + P P+ P+
Sbjct: 251 CQLFSSQPQLVTMNLNSMGTIKLQLVVTWLPLLASKSSTKPTIAPNPPE 299
>AL132898-14|CAC14406.1| 1641|Caenorhabditis elegans Hypothetical
protein Y59A8B.1a protein.
Length = 1641
Score = 27.5 bits (58), Expect = 7.3
Identities = 17/57 (29%), Positives = 21/57 (36%), Gaps = 4/57 (7%)
Frame = -1
Query: 232 KSPSVPYRPSRPDGGAXPRSRGTRREEHHLLAKPAXH----IPEPLSTTNAATSSSH 74
K+ P P RP G P T E + + +P P N TSSSH
Sbjct: 8 KNSGAPEEPRRPRGPRTPDGEPTEANERPCSSSSSLSNDSFVPAPQGPQNGHTSSSH 64
>Z73906-10|CAB54209.1| 530|Caenorhabditis elegans Hypothetical
protein D2030.9b protein.
Length = 530
Score = 27.1 bits (57), Expect = 9.6
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +3
Query: 279 YPIEHGIVTN-WDDMEKIWHHTFYNELRVAPEEHP 380
+P E+ IV++ WD + +W E +AP +HP
Sbjct: 452 HPTENEIVSSAWDGVTTVWTWDERQEGVIAPYDHP 486
>Z73906-9|CAA98121.1| 571|Caenorhabditis elegans Hypothetical
protein D2030.9a protein.
Length = 571
Score = 27.1 bits (57), Expect = 9.6
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +3
Query: 279 YPIEHGIVTN-WDDMEKIWHHTFYNELRVAPEEHP 380
+P E+ IV++ WD + +W E +AP +HP
Sbjct: 493 HPTENEIVSSAWDGVTTVWTWDERQEGVIAPYDHP 527
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,424,169
Number of Sequences: 27780
Number of extensions: 285306
Number of successful extensions: 1124
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 990
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1096
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -