Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060281.seq
         (580 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   2.2  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   3.8  
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               22   5.0  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    21   6.7  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   8.8  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 354  LRVAPEEHPVLLTEXPLNPKANREKM 431
            LR+ P  H V+ T   +NP  + EK+
Sbjct: 1461 LRLGPCWHAVMTTYPRINPDNHNEKL 1486


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = +2

Query: 443 VRNIQHARHVRRHPSRALAVRVGRTNRYRAWTPATV 550
           V  I    H++ + S    +RV R    R W P T+
Sbjct: 58  VTQIWTDHHLKWNASEFAGIRVIRVPYNRVWRPDTI 93


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 7/12 (58%), Positives = 11/12 (91%)
 Frame = -2

Query: 261 LFSLCLISYIRV 226
           LF+LC++SY+ V
Sbjct: 8   LFTLCIVSYMMV 19


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 555 ENTVAGVQARYRLVRP 508
           ENT+ G+   YRL +P
Sbjct: 484 ENTIQGLPPPYRLNKP 499


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -1

Query: 151 HHLLAKPAXHIPEPLSTTNAATSSS 77
           HHL        PEP  ++ ++T SS
Sbjct: 342 HHLHVAKQMASPEPPKSSESSTGSS 366


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,311
Number of Sequences: 438
Number of extensions: 3211
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16748661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)