Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060280.seq
         (669 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    22   4.0  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    21   6.9  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   9.1  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   9.1  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    21   9.1  

>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 588 PTKFLNLNLNLPKRSTQIAIXFGLQW 665
           P +   LNLN P   TQ+ +  GL +
Sbjct: 190 PLQNPGLNLNPPVTQTQLPLNLGLDF 215


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = +3

Query: 3   HEARNRQKDKRWNRRETASLQ*RPP 77
           HE   R +D ++  R  + +  RPP
Sbjct: 270 HEVEKRAQDGQYEYRSLSHVSLRPP 294


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -1

Query: 183  TSENNPSIQVF 151
            TS NNPSI  F
Sbjct: 1404 TSSNNPSISAF 1414


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -1

Query: 183  TSENNPSIQVF 151
            TS NNPSI  F
Sbjct: 1404 TSSNNPSISAF 1414


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -2

Query: 437 HAVHGLRRQHARVATQLVASQILRHRE 357
           HA H +  QH  V   + A+  L+H +
Sbjct: 325 HAGHHIHAQHHVVNHHVAANGSLKHHQ 351


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,526
Number of Sequences: 336
Number of extensions: 3068
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17385535
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)