Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060280.seq
         (669 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H1.10 |||phytochelatin synthetase |Schizosaccharomyces pomb...    31   0.15 
SPCC622.09 |htb1||histone H2B |Schizosaccharomyces pombe|chr 3||...    28   1.1  
SPCC1281.03c |||DUF1077 family protein|Schizosaccharomyces pombe...    27   2.4  
SPCC569.05c |||spermidine family transporter |Schizosaccharomyce...    25   7.5  
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo...    25   7.5  
SPBC2G5.07c |rpc25||DNA-directed RNA polymerase III complex subu...    25   9.9  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    25   9.9  

>SPAC3H1.10 |||phytochelatin synthetase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 414

 Score = 31.1 bits (67), Expect = 0.15
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = -3

Query: 523 CGVW*YLLMTTCSMARCSKLWAGSWRWCSTRSTDCAASM 407
           CG+    ++         +LW GSWRW      DC  S+
Sbjct: 91  CGLGTLCMILNSLKVDPGRLWKGSWRWYDQYMLDCCRSL 129


>SPCC622.09 |htb1||histone H2B |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 126

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = -1

Query: 147 LWERLSDDASKISVFGYKSLSESLEVFIEVRRFLFGSI 34
           ++ER++ +ASK++ +  KS   S E+   VR  L G +
Sbjct: 69  IFERIATEASKLAAYNKKSTISSREIQTAVRLILPGEL 106


>SPCC1281.03c |||DUF1077 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 193

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 17/47 (36%), Positives = 26/47 (55%)
 Frame = -2

Query: 263 DRERPAICDRAVKIRSESGPRFPQVWRPVRIILVSKSLHSGNVSLTT 123
           D  +PA+  +  KI   S  +FP      +  LVSK++HSGN + +T
Sbjct: 11  DLVKPALAKKPKKIVDNSD-KFPTPRGFQQKSLVSKNIHSGNSASST 56


>SPCC569.05c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 576

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +3

Query: 195 WESWSGLASYLHGSIADSRPLTVPC 269
           W SWSG  SY+H  +     L   C
Sbjct: 462 WLSWSGYYSYVHWIVPTLSGLATGC 486


>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
           Wis4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1401

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 177 HWSPYLWESWSGLASYLHGSI 239
           H   Y+ E W GL ++LHG +
Sbjct: 269 HSGTYISEVWLGLQAWLHGRL 289


>SPBC2G5.07c |rpc25||DNA-directed RNA polymerase III complex subunit
           Rpc25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 203

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +2

Query: 35  MEPKRNRLTSIKTSRDSLRLL*PKTLILEASSERRSQSVKTW 160
           + PKRN+  +  T  ++L  + P TLI  AS  R    +  W
Sbjct: 162 ISPKRNKNATAITGTEALESVSPYTLI--ASCSRDGLGIPAW 201


>SPBC211.03c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1462

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -1

Query: 144 WERLSDDASKISVFGYKSLSESLEVFIEVRRFLFGSI 34
           W+   + + K   F YK ++E  E+  E+  F  GSI
Sbjct: 250 WDASEEHSIKGEEFHYKKITEGDEISNEIDPFGIGSI 286


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,724,029
Number of Sequences: 5004
Number of extensions: 53121
Number of successful extensions: 192
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)