Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060280.seq
(669 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1071 + 25824311-25824460,25824774-25824857,25825168-258252... 33 0.27
12_01_0797 + 7300370-7300506,7300682-7300798,7301903-7302443,730... 32 0.36
07_03_0270 + 16094334-16094539,16095067-16095177,16095431-16095896 30 1.9
03_01_0504 - 3792170-3792565 30 1.9
02_04_0219 + 21007875-21008253,21009774-21009811,21009948-210099... 30 1.9
10_08_0617 + 19291107-19292669 29 2.5
02_01_0423 - 3092863-3094959 29 2.5
02_01_0402 - 2934074-2937217 29 3.3
04_04_1065 + 30529555-30530076 29 4.4
07_03_0822 + 21762662-21762767,21763295-21763347,21764639-217647... 28 5.9
05_03_0428 + 13899295-13899669 28 5.9
10_08_0623 + 19339639-19341210 28 7.7
10_04_0004 + 7389321-7390013 28 7.7
10_01_0357 - 3928646-3928954 28 7.7
04_04_1263 - 32207636-32207938,32208020-32208170,32208263-322085... 28 7.7
01_06_1061 - 34169469-34169624,34170837-34170938,34171029-341711... 28 7.7
01_06_0714 + 31413195-31413221,31414238-31414786 28 7.7
>12_02_1071 +
25824311-25824460,25824774-25824857,25825168-25825246,
25825334-25825428,25825940-25826067,25826160-25826393,
25826509-25826683,25826716-25826748,25827292-25827375,
25827929-25828169,25828275-25828453,25828800-25828873,
25830800-25830950,25831178-25831252,25831748-25831778,
25832107-25832339
Length = 681
Score = 32.7 bits (71), Expect = 0.27
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +1
Query: 169 IILTGLHTCGNLGPDSLRIFTARSQIAGL 255
++L GLH CG+L + LR+F + Q+ L
Sbjct: 240 LVLAGLHACGDLSVNMLRLFVSCEQVKAL 268
>12_01_0797 + 7300370-7300506,7300682-7300798,7301903-7302443,
7302885-7304042,7304133-7304291,7304397-7304504,
7305045-7305304,7305936-7306101,7307025-7307050,
7307318-7307402,7307486-7307695,7308815-7308872,
7308964-7309037,7309323-7309373,7309576-7309664,
7310027-7310104,7310164-7310269
Length = 1140
Score = 32.3 bits (70), Expect = 0.36
Identities = 36/122 (29%), Positives = 55/122 (45%), Gaps = 6/122 (4%)
Frame = -2
Query: 350 RPL--STSVLLLENIEEFHV*VLGEEVVTTRDRERPAICDRAVKIRS----ESGPRFPQV 189
RPL ST LL + EEF + + EE P+ RA+ + + E G R
Sbjct: 766 RPLCSSTHSLLRDGEEEFLLSLTAEEAAMFL-HSLPSSIRRALPVAAHGLLELGTRTSSS 824
Query: 188 WRPVRIILVSKSLHSGNVSLTTPPRSVSLVIKA*ANLWRSLLK*GGFSSVPSFILLAIAC 9
W +S HS N L +PP + V++A WR + GG S ++++L +C
Sbjct: 825 WH--------RSNHSENKYLRSPPIILQKVVEA----WRMPRREGGRSRSAAYLVLFASC 872
Query: 8 LV 3
L+
Sbjct: 873 LL 874
>07_03_0270 + 16094334-16094539,16095067-16095177,16095431-16095896
Length = 260
Score = 29.9 bits (64), Expect = 1.9
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
Frame = +1
Query: 1 GTRHAIAKRINDGTEEKP--PHFNKDL--QRFAQAFITKDTDLGGVVRETFPECKDLDTR 168
G+ I + D + P + KD+ RFA+++ LG R+ + D +R
Sbjct: 73 GSSRRIILELGDRDDSYPWRKYGQKDILGARFARSYYRCAQMLGCTARKQVQQSDDDPSR 132
Query: 169 IILT--GLHTCGNLGPDS 216
+ +T GLHTCG P S
Sbjct: 133 LEITYIGLHTCGGDRPSS 150
>03_01_0504 - 3792170-3792565
Length = 131
Score = 29.9 bits (64), Expect = 1.9
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +1
Query: 394 VATRACWRRSPWTACCTSASCRPTAYCTA 480
V +CW +P C ++S RP+ + TA
Sbjct: 85 VLVESCWNNNPLVPACVASSVRPSWFLTA 113
>02_04_0219 +
21007875-21008253,21009774-21009811,21009948-21009976,
21010398-21010443,21010567-21010681,21010790-21010857,
21011780-21011974,21012180-21012281,21012889-21013119,
21013514-21013684
Length = 457
Score = 29.9 bits (64), Expect = 1.9
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +1
Query: 394 VATRACWRRSPWTACCTSASCRPTAYCTA 480
V +CW +P C ++S RP+ + TA
Sbjct: 85 VLVESCWNNNPLVPACVASSVRPSWFLTA 113
>10_08_0617 + 19291107-19292669
Length = 520
Score = 29.5 bits (63), Expect = 2.5
Identities = 17/37 (45%), Positives = 21/37 (56%)
Frame = -2
Query: 221 RSESGPRFPQVWRPVRIILVSKSLHSGNVSLTTPPRS 111
RS GP VWR +R LV+++LH V L P RS
Sbjct: 122 RSSYGP----VWRVLRRNLVAETLHPSRVRLFAPARS 154
>02_01_0423 - 3092863-3094959
Length = 698
Score = 29.5 bits (63), Expect = 2.5
Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = -2
Query: 185 RPVRIILVSKSLHSGNVSLTTPPRSVSLVI-KA*ANLWRSLLK*GGFSSVPSFILLAIA 12
RP++++ +S +L +GN TT R +LV+ A N + + +S PSF +L ++
Sbjct: 140 RPLQVLNISSNLFTGNFPSTTWERMNNLVVLNASNNRFTGQMPTSFCASAPSFAVLELS 198
>02_01_0402 - 2934074-2937217
Length = 1047
Score = 29.1 bits (62), Expect = 3.3
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Frame = -2
Query: 185 RPVRIILVSKSLHSGNVSLTTPPRSVSLV-IKA*ANLWRSLLK*GGFSSVPSFILLAIA 12
RP++++ +S +L +GN TT SLV + A N + + +S PSF LL I+
Sbjct: 154 RPLQVLNISSNLFTGNFPSTTWEVMKSLVALNASNNSFTGKIPTSFCASAPSFALLDIS 212
>04_04_1065 + 30529555-30530076
Length = 173
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/38 (28%), Positives = 18/38 (47%)
Frame = +2
Query: 209 RTRFVSSRLDRR*QASHGPVLLPPPHRGLRRGTLRCFP 322
+ R +DR H P+ +PP ++ + L CFP
Sbjct: 55 KVRMPQHEVDRIMSYKHRPLTMPPGYKNFSKELLACFP 92
>07_03_0822 +
21762662-21762767,21763295-21763347,21764639-21764764,
21764960-21765062,21765146-21765222
Length = 154
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +2
Query: 539 LKRISKCDTFEQYLKMADKILKFKSKSAETFY 634
L+ ISK DT E L + D++L K A FY
Sbjct: 108 LRNISKEDTVEYVLALIDEMLAVNPKRAALFY 139
>05_03_0428 + 13899295-13899669
Length = 124
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = +1
Query: 385 TSWVATRACWRRSPWTACCTSASCRPTAYCTAPCCRLSSR 504
T ++R+C RSP CC RP + AP RL R
Sbjct: 85 TCSTSSRSC--RSPAPVCCCRHQTRPPSVTAAPVKRLRGR 122
>10_08_0623 + 19339639-19341210
Length = 523
Score = 27.9 bits (59), Expect = 7.7
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Frame = -2
Query: 257 ERPAICDRAVKIRSE---SGPRFPQVWRPVRIILVSKSLHSGNVSLTTPPRS 111
+RPA+ + S+ S + VWR +R LV+++LH V L P R+
Sbjct: 105 DRPAMASTRLLGESDNLISRASYGPVWRLLRRNLVAETLHPSRVRLFAPARA 156
>10_04_0004 + 7389321-7390013
Length = 230
Score = 27.9 bits (59), Expect = 7.7
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -2
Query: 236 RAVKIRSESGPRFPQVWRPV 177
RA +RS + PR +WRP+
Sbjct: 167 RATVVRSSNAPRIAPIWRPI 186
>10_01_0357 - 3928646-3928954
Length = 102
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/42 (28%), Positives = 19/42 (45%)
Frame = +1
Query: 391 WVATRACWRRSPWTACCTSASCRPTAYCTAPCCRLSSRDITK 516
W A A + TA ++A+ T C PC ++R I +
Sbjct: 3 WAAAAAATASAAATAVASAATAAATERCVTPCSNPTARSIPR 44
>04_04_1263 - 32207636-32207938,32208020-32208170,32208263-32208500,
32208604-32208814,32208927-32209108,32209196-32209297,
32210002-32211187,32212103-32212499,32212551-32212582,
32212885-32213157,32213307-32213394,32213486-32213723,
32213824-32214034,32214119-32214300,32214378-32214479,
32214801-32216224,32216751-32216822,32217688-32217719,
32218186-32218263,32218425-32218512,32218608-32218845,
32219060-32219162,32219386-32219558,32219644-32219745,
32219825-32220606,32220659-32221012,32224055-32224140,
32224250-32224400,32224534-32224771,32224876-32225119,
32225190-32225368,32225577-32225675,32225835-32227083
Length = 3195
Score = 27.9 bits (59), Expect = 7.7
Identities = 15/33 (45%), Positives = 16/33 (48%)
Frame = +1
Query: 382 ATSWVATRACWRRSPWTACCTSASCRPTAYCTA 480
A+SW T R SP C ASC P YC A
Sbjct: 1751 ASSW--TVVVQRPSPTIVCDPYASCGPFGYCDA 1781
>01_06_1061 -
34169469-34169624,34170837-34170938,34171029-34171180,
34172087-34172153,34172239-34172419,34172655-34172778,
34174775-34174871,34175929-34176331,34176729-34176888,
34177412-34177486,34177714-34177892,34178224-34178303,
34178561-34179322
Length = 845
Score = 27.9 bits (59), Expect = 7.7
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = -1
Query: 249 CYLRSSREDTKRVRTKIPTSMETSENNPSIQVFTLWERLSDDASKIS 109
C L SS+ K R PT +T PS + T R +D + +S
Sbjct: 545 CQLPSSQITVKMTRRNTPTGQKTVAEKPSAGLLTGSRRSHEDNAPVS 591
>01_06_0714 + 31413195-31413221,31414238-31414786
Length = 191
Score = 27.9 bits (59), Expect = 7.7
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Frame = -1
Query: 234 SREDTKRVRTKIPTSMETSENNPSIQVFTLWERLSDDASKISVFGYKSLSESL--EVFIE 61
+RE RV ++ S +NP ++ WE+ + K G +SL L EV+ E
Sbjct: 123 TREVWNRVAARLECSQLFLAHNPEEKLIEWWEKRTSQQDKRQTKGLRSLHVLLCWEVWCE 182
Query: 60 VRRFLF 43
R +F
Sbjct: 183 RNRRIF 188
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,753,716
Number of Sequences: 37544
Number of extensions: 385727
Number of successful extensions: 1352
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1299
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1352
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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