Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060280.seq
         (669 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14525| Best HMM Match : Phospholip_A2_1 (HMM E-Value=2.2)           40   0.001
SB_16484| Best HMM Match : MSG (HMM E-Value=0.24)                      35   0.052
SB_1943| Best HMM Match : Vicilin_N (HMM E-Value=0.67)                 32   0.37 
SB_16622| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     28   7.9  
SB_38612| Best HMM Match : TSP_1 (HMM E-Value=3.3e-11)                 28   7.9  

>SB_14525| Best HMM Match : Phospholip_A2_1 (HMM E-Value=2.2)
          Length = 462

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 14/35 (40%), Positives = 23/35 (65%)
 Frame = +1

Query: 151 KDLDTRIILTGLHTCGNLGPDSLRIFTARSQIAGL 255
           +D D R++L GLHTCG+L P ++++F     +  L
Sbjct: 298 EDTDPRLVLVGLHTCGDLAPTAIKLFIGDESVKAL 332


>SB_16484| Best HMM Match : MSG (HMM E-Value=0.24)
          Length = 661

 Score = 35.1 bits (77), Expect = 0.052
 Identities = 17/38 (44%), Positives = 21/38 (55%)
 Frame = +1

Query: 142 PECKDLDTRIILTGLHTCGNLGPDSLRIFTARSQIAGL 255
           P+C D     IL GLH CG+L P  L++F    Q  GL
Sbjct: 65  PKCPDF----ILVGLHPCGDLVPTMLKVFAKCDQAVGL 98


>SB_1943| Best HMM Match : Vicilin_N (HMM E-Value=0.67)
          Length = 695

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = +1

Query: 142 PECKDLDTRIILTGLHTCGNLGPDSLRIF 228
           P+C D     IL GLH CG+L P  LR+F
Sbjct: 250 PKCPDF----ILVGLHPCGDLVPTMLRVF 274


>SB_16622| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 1239

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = -3

Query: 439 STRSTDCAASMRALRPSL*PLRYSDIG--KPCVLSPLPY 329
           S+RSTDC    R+ +  L  L  SD G  KP   + LPY
Sbjct: 794 SSRSTDCTECNRSFQELLEKLNQSDNGPSKPKKKAKLPY 832


>SB_38612| Best HMM Match : TSP_1 (HMM E-Value=3.3e-11)
          Length = 900

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 3/34 (8%)
 Frame = +1

Query: 412 WRRSPWTAC---CTSASCRPTAYCTAPCCRLSSR 504
           W+  PW+AC   C    C  +A      C  SSR
Sbjct: 567 WKTGPWSACSKACGPGQCLMSANIVLKTCGFSSR 600


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,273,753
Number of Sequences: 59808
Number of extensions: 431437
Number of successful extensions: 1352
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1348
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)