Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060280.seq
         (669 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132948-20|CAD31821.1|  391|Caenorhabditis elegans Hypothetical...    28   6.9  
Z83103-3|CAB05473.1|  376|Caenorhabditis elegans Hypothetical pr...    27   9.1  
AF003389-1|AAC71138.2|  865|Caenorhabditis elegans Hypothetical ...    27   9.1  

>AL132948-20|CAD31821.1|  391|Caenorhabditis elegans Hypothetical
           protein Y39B6A.24 protein.
          Length = 391

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = -2

Query: 161 SKSLHSGNVSLTTPPRSVSLVI-KA*ANLW 75
           S  ++ GN ++ TPP+ VSLV+    AN+W
Sbjct: 61  SDEVYLGNFTVGTPPQPVSLVLDTGSANMW 90


>Z83103-3|CAB05473.1|  376|Caenorhabditis elegans Hypothetical
           protein D1025.3 protein.
          Length = 376

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +3

Query: 414 AAQSVDRVLHQRQLPAHSLLHRAMLQ 491
           A  S D+VL QRQ+ +HS  H   LQ
Sbjct: 9   AVCSNDKVLRQRQMTSHSAWHNLPLQ 34


>AF003389-1|AAC71138.2|  865|Caenorhabditis elegans Hypothetical
           protein F23H11.2 protein.
          Length = 865

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 14/33 (42%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
 Frame = +2

Query: 515 NTTLKE-GKLKRISKCDTFEQYLKMADKILKFK 610
           NT  K     K    CDTFE+Y   A   L FK
Sbjct: 641 NTFFKHFSAFKTTESCDTFEEYFPCAKNYLLFK 673


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,157,819
Number of Sequences: 27780
Number of extensions: 297667
Number of successful extensions: 1085
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1025
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1084
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)