Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060280.seq
         (669 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        23   2.6  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.6  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    23   2.6  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   4.6  

>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 7/23 (30%), Positives = 12/23 (52%)
 Frame = +3

Query: 156 LGY*DYSHWSPYLWESWSGLASY 224
           +G  D+  W P   ++W+ L  Y
Sbjct: 139 VGVIDFESWRPIFRQNWASLQPY 161


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -1

Query: 573 CSKVSHFEMRFNLPSF 526
           CS V HFE  FN  S+
Sbjct: 73  CSDVHHFESSFNAQSW 88


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -2

Query: 176 RIILVSKSLHSGNVSLTTPPRSVSLVIKA*ANLWRSLLK 60
           RI  V     S N+SL  PP   +L +   A+L  +L K
Sbjct: 228 RIDAVPHLFESANISLDEPPLGKNLNLSLHASLNHTLTK 266


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -3

Query: 418 AASMRALRPSL*PLRYSDIGKPCVLSP 338
           A S R++ P     +Y  IGK C LSP
Sbjct: 73  AESSRSIDPCA--SKYCGIGKECELSP 97


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,362
Number of Sequences: 438
Number of extensions: 3591
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)