Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060280.seq
         (669 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g16650.1 68414.m01994 expressed protein                             39   0.003
At2g44900.1 68415.m05589 armadillo/beta-catenin repeat family pr...    34   0.098
At1g32190.1 68414.m03959 expressed protein                             32   0.30 
At5g19370.1 68418.m02308 rhodanese-like domain-containing protei...    30   1.2  
At1g07910.1 68414.m00860 expressed protein identical to GB:AAB07...    29   2.1  
At3g62660.1 68416.m07039 glycosyl transferase family 8 protein l...    28   6.5  
At3g56160.1 68416.m06242 expressed protein                             27   8.5  
At1g73470.2 68414.m08506 expressed protein                             27   8.5  
At1g73470.1 68414.m08505 expressed protein                             27   8.5  

>At1g16650.1 68414.m01994 expressed protein
          Length = 521

 Score = 38.7 bits (86), Expect = 0.003
 Identities = 33/92 (35%), Positives = 50/92 (54%), Gaps = 6/92 (6%)
 Frame = +3

Query: 255 LTVPCCYHLLTEDSDVELFDVFQKEYGSGERTQGFPMSEYLR--GYKLGRNARMLAAQSV 428
           +++ CCY+LL+E S  +          S  +  G+PMS  LR  G+ LG+NAR LA QS 
Sbjct: 291 VSIGCCYNLLSEKSSED----------SCSKC-GYPMSAGLRSLGFSLGKNARDLACQSA 339

Query: 429 DR--VLHQRQLPAHSLLH--RAMLQVVIKRYY 512
           +R   L +     +  LH  RA  Q+V+ ++Y
Sbjct: 340 ERWSSLGEDAGLQNFELHSFRAAFQMVLSKHY 371



 Score = 28.3 bits (60), Expect = 4.9
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 169 IILTGLHTCGNLGPDSLRIFTARSQIAGL 255
           ++L GLH CG+L    LR F    ++  L
Sbjct: 262 LVLAGLHACGDLSVTMLRTFMECEEVKAL 290


>At2g44900.1 68415.m05589 armadillo/beta-catenin repeat family
           protein / F-box family protein contains similarity to
           F-box protein FBL2 GI:6010699 from [Rattus norvegicus];
           contains Pfam profiles PF00514:
           Armadillo/beta-catenin-like repeat, PF00646: F-box
           domain
          Length = 930

 Score = 33.9 bits (74), Expect = 0.098
 Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
 Frame = +1

Query: 364 CLSI*EATSWVATRACWRRSPWTACC-TSASCRPTAYCTAPCCRLSSRDITKHHIKGRQI 540
           CL+  +  S  +T   WR    ++C  TS   RP  +  +    L+SR +  H+++ R +
Sbjct: 61  CLNYRDRASLASTCKTWRCLGASSCLWTSLDLRPHKFDASMAASLASRCVNLHYLRFRGV 120

Query: 541 ETHLEMRHLR 570
           E+   + HL+
Sbjct: 121 ESADSLIHLK 130


>At1g32190.1 68414.m03959 expressed protein
          Length = 422

 Score = 32.3 bits (70), Expect = 0.30
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = +1

Query: 415 RRSPWTACCTSASCRPTAYCTAPCC 489
           RR   T CC S  CRP+  C  P C
Sbjct: 288 RRDESTGCCCSGLCRPSCSCPKPRC 312


>At5g19370.1 68418.m02308 rhodanese-like domain-containing protein /
           PPIC-type PPIASE domain-containing protein low
           similarity to MPT-synthase sulfurylase [Synechococcus
           sp. PCC 7942] GI:2950364; contains Pfam profiles
           PF00581: Rhodanese-like domain, PF00639: PPIC-type
           PPIASE domain; identical to cDNA peptidyl-prolyl
           cis-trans isomerase GI:2246379
          Length = 299

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 17/43 (39%), Positives = 24/43 (55%)
 Frame = +3

Query: 216 ASYLHGSIADSRPLTVPCCYHLLTEDSDVELFDVFQKEYGSGE 344
           AS+  GS   S    +    HLL +++DVELF   QK++  GE
Sbjct: 81  ASFSSGSSGSSASREI-LVQHLLVKNNDVELFAELQKKFLDGE 122


>At1g07910.1 68414.m00860 expressed protein identical to GB:AAB07881
            AT.I.24-9 gene product from [Arabidopsis thaliana] (Mol.
            Gen. Genet. 219 (1-2), 106-112 (1989))
          Length = 1081

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
 Frame = +3

Query: 291  DSDVELFDVFQKEYGSGERTQGFPMSEYLRGYKLGRNARMLAAQSVDRVLHQRQLPAHSL 470
            +  ++LF++  + +G  E T+G   +E+ +  K  R+   L A S    L   Q+P  S+
Sbjct: 847  EEGIDLFNLHSRRHGRLESTKGTYAAEWTKWEKQLRDT--LVANS--EYLSSIQVPFESM 902

Query: 471  LH--RAMLQVVIKRYYQTP 521
            +H  R  L+ + K  Y+ P
Sbjct: 903  VHQVREELKTIAKGDYKPP 921


>At3g62660.1 68416.m07039 glycosyl transferase family 8 protein low
           similarity to glycosyl transferase lgtC - Neisseria
           gonorrhoeae, EMBL:AF208062; contains Pfam glycosyl
           transferase family 8 domain PF01501
          Length = 361

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 94  FITKDTDLGGVVRETFPECK 153
           F+  +TDL  ++R TFPE K
Sbjct: 118 FLVSETDLESLIRSTFPELK 137


>At3g56160.1 68416.m06242 expressed protein 
          Length = 436

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +2

Query: 116 LEASSERRSQSVKTWILGLFSLVSILV 196
           L   +E    +VK W LGLF L+SIL+
Sbjct: 150 LTLRTEAIGAAVKGWPLGLFGLISILL 176


>At1g73470.2 68414.m08506 expressed protein
          Length = 248

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +3

Query: 219 SYLHGSIADSRPLTVPCCYHLLTEDSDVELFDVFQKEYGSGERTQGFP 362
           SY +  +A    L +PC   L TED + E+F ++  +  S E +  FP
Sbjct: 37  SYRNVLLAVRNNLNIPCSSQLPTEDLEAEIF-LYLVDNFSSEASGVFP 83


>At1g73470.1 68414.m08505 expressed protein
          Length = 351

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +3

Query: 219 SYLHGSIADSRPLTVPCCYHLLTEDSDVELFDVFQKEYGSGERTQGFP 362
           SY +  +A    L +PC   L TED + E+F ++  +  S E +  FP
Sbjct: 140 SYRNVLLAVRNNLNIPCSSQLPTEDLEAEIF-LYLVDNFSSEASGVFP 186


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,656,439
Number of Sequences: 28952
Number of extensions: 292410
Number of successful extensions: 1060
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1027
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1059
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1412971776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)