Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060279.seq
(680 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S... 30 0.36
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1... 29 0.47
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom... 29 0.82
SPAC644.04 |pct1||RNA 5'-triphosphatase|Schizosaccharomyces pomb... 28 1.4
SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces po... 27 1.9
SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc... 27 1.9
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 27 1.9
SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces po... 26 4.4
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa... 26 5.8
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 26 5.8
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc... 26 5.8
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 25 7.7
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac... 25 7.7
SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 25 7.7
>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 971
Score = 29.9 bits (64), Expect = 0.36
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = +2
Query: 215 HFGSYTKRYAQEQHLRDRIKSKVDEQFDQLEREYSDKIDGFHDNIQ 352
HFG YA E +RD ++ + F LE + I GF D Q
Sbjct: 714 HFGLDNFMYASENRIRDAVRDMELDVFGLLESDTQRLIMGFRDLTQ 759
>SPBC947.11c |elg1||DNA replication factor C complex subunit
Elg1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 920
Score = 29.5 bits (63), Expect = 0.47
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Frame = -2
Query: 625 FREQRAQ*LCYQSGCTQKIA--LGCCRSXIPASTRIPPRSSV 506
+ + Q C S C KIA L CR P S+ +PP SS+
Sbjct: 329 YAPSKTQDCCAFSQCLSKIADWLRSCRLTKPESSSVPPSSSI 370
>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 762
Score = 28.7 bits (61), Expect = 0.82
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = -2
Query: 571 IALGCCRSXIPASTRIPPRSSVVFVDQLGQTVFFVSFNRLFIGIIMTF 428
I + C RS I +TRIPP V+ + LG F F+ +I+ F
Sbjct: 643 IFMDCKRSVINTTTRIPPYFWVLLI-VLGWNEFMAILRNPFVFMILMF 689
>SPAC644.04 |pct1||RNA 5'-triphosphatase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 303
Score = 27.9 bits (59), Expect = 1.4
Identities = 21/91 (23%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
Frame = +2
Query: 104 VPDGYSRLSCGRTNQRVGVH*QDYEHAIDKTRSHDV*HFGSYTKRYAQEQHLRD--RIKS 277
+P G + S R RVG Q+ + + KT +D + T+R+ E + ++
Sbjct: 214 MPSGNQQPSLTRLKDRVGYVHQEIKIDLTKTTQNDPVY--DTTERHELEVEFGNIADLRD 271
Query: 278 KVDEQFDQLEREYSDKIDGFHDNIQYFKDEH 370
+ + D +E ++ F DN++ + EH
Sbjct: 272 RAQKAKDGMEAPLFRRVQLFMDNVRILRREH 302
>SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 581
Score = 27.5 bits (58), Expect = 1.9
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = -1
Query: 206 HENGFCQLRVHN--LVNVHQLSGLFVHMTISNNRLGHVDFYRKNYTHFA 66
HENG L +V+VH SGLF + TI R+ V Y ++T A
Sbjct: 149 HENGVLSLPFSGSAVVDVHNSSGLFSNDTIPEERI--VLIYTDHWTGVA 195
>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 935
Score = 27.5 bits (58), Expect = 1.9
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +2
Query: 293 FDQLEREYSDKIDGFHDNIQYFKDEHYSVSCQNGSVLKS 409
FD+ E + + GFHD YF + + QN ++ KS
Sbjct: 17 FDEANDEAYESV-GFHDYADYFSRKQRKLQNQNAALYKS 54
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 27.5 bits (58), Expect = 1.9
Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 2/92 (2%)
Frame = +2
Query: 242 AQEQHLRDRIKSKVDEQFDQLERE--YSDKIDGFHDNIQYFKDEHYSVSCQNGSVLKSKF 415
+ EQHL+ + +KV + FD + R D +D + Y H + +GS + +
Sbjct: 633 SNEQHLQPGLLNKVSKSFDSVHRRNLSQDSLDAMTEQFSY----HVEPNILSGSGIPVRV 688
Query: 416 AKILKSHDYTDKKSIETYEKYCLPQLVDKHNT 511
K+ D + S P L D +T
Sbjct: 689 HTPSKTEDLDESFSGSEISSSPSPLLPDVSDT 720
>SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 26.2 bits (55), Expect = 4.4
Identities = 15/47 (31%), Positives = 19/47 (40%)
Frame = +2
Query: 338 HDNIQYFKDEHYSVSCQNGSVLKSKFAKILKSHDYTDKKSIETYEKY 478
H N K + S SC+ V SK + I D DKK + Y
Sbjct: 76 HGNSGSQKTHNVSFSCEIRKVKSSKLSPISNMEDSEDKKEEDESSSY 122
>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 639
Score = 25.8 bits (54), Expect = 5.8
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +2
Query: 266 RIKSKVDEQFDQLEREYSDKIDGFHDNI 349
R + K D ++ LEREY D F +++
Sbjct: 285 RAQLKKDPNYESLEREYQKACDDFENSL 312
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 25.8 bits (54), Expect = 5.8
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +2
Query: 404 KSKFAKILKSHDYTDKKSIETYEKYCLPQLVDKHNTA 514
+ F K ++ D K + YE L +L+DKH TA
Sbjct: 463 REDFTKDVEKSDLWIKSLRQEYESKNLLELLDKHQTA 499
>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 25.8 bits (54), Expect = 5.8
Identities = 16/80 (20%), Positives = 40/80 (50%)
Frame = +2
Query: 281 VDEQFDQLEREYSDKIDGFHDNIQYFKDEHYSVSCQNGSVLKSKFAKILKSHDYTDKKSI 460
+D+Q ++ R+Y + +++ + Y V+ +G+ + + S +D+K +
Sbjct: 877 IDDQLIEVARDYHPL---WATSVEILSERKYFVTEADGNAVILLRDNV--SPQLSDRKKL 931
Query: 461 ETYEKYCLPQLVDKHNTATW 520
Y+K+ L +L++K T+
Sbjct: 932 RWYKKFYLGELINKTRHCTF 951
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.4 bits (53), Expect = 7.7
Identities = 21/94 (22%), Positives = 41/94 (43%), Gaps = 3/94 (3%)
Frame = -1
Query: 476 IFRKFQ*TFYRYNHDFLKF*QTCFSTRCHFGNLPNSVH---L*NTGCYREIHQFYRCIRV 306
IF K+ + + DF++F + CF +R GNL +H +T + ++ +
Sbjct: 2524 IFIKYTTSSFFLTDDFVRFIRVCFHSRIS-GNLLTLLHGISFDSTKAVAPVLTYFDFCSL 2582
Query: 305 LVDQIVHRLLILFCRANVVLARNASYRTRNVKHH 204
I+ R+ + F + NA+ + N+ H
Sbjct: 2583 TTGNILGRIALAF----TSIDENANLESANIFEH 2612
>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
Smc6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1140
Score = 25.4 bits (53), Expect = 7.7
Identities = 17/67 (25%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Frame = +2
Query: 272 KSKVDE-QFDQLEREYSDKIDGFHDNIQYFKDEHYSVSCQNGSVLKSKFAKILKSHDYTD 448
++K+++ +F + E+ +KI+G I + E S+ Q SVL ++ + L+
Sbjct: 738 EAKIEQAKFKRDEQLLVEKIEGIKKRILLKRREVNSLESQELSVLDTEKIQTLERRISET 797
Query: 449 KKSIETY 469
+K +E+Y
Sbjct: 798 EKELESY 804
>SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 612
Score = 25.4 bits (53), Expect = 7.7
Identities = 12/17 (70%), Positives = 13/17 (76%), Gaps = 2/17 (11%)
Frame = -1
Query: 236 ASY--RTRNVKHHENGF 192
ASY +T NVKHHEN F
Sbjct: 30 ASYCPQTINVKHHENSF 46
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,658,144
Number of Sequences: 5004
Number of extensions: 55398
Number of successful extensions: 166
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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