Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060279.seq
(680 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_21206| Best HMM Match : PaREP8 (HMM E-Value=2.4) 40 0.002
SB_47506| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.21
SB_15799| Best HMM Match : PH (HMM E-Value=0.76) 31 0.65
SB_55028| Best HMM Match : Dynamitin (HMM E-Value=0.66) 31 0.65
SB_30188| Best HMM Match : fn1 (HMM E-Value=0.48) 30 1.5
SB_32609| Best HMM Match : zf-C2H2 (HMM E-Value=0) 30 2.0
SB_6763| Best HMM Match : WD40 (HMM E-Value=4.6e-24) 29 2.6
SB_21242| Best HMM Match : Prog_receptor (HMM E-Value=0.79) 29 3.5
SB_46289| Best HMM Match : DUF1690 (HMM E-Value=0.32) 29 3.5
SB_17656| Best HMM Match : TIR (HMM E-Value=1.3) 29 4.6
SB_3185| Best HMM Match : Sec63 (HMM E-Value=0) 29 4.6
SB_806| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_55146| Best HMM Match : Synaptobrevin (HMM E-Value=1.4) 28 6.1
SB_22442| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.0
>SB_21206| Best HMM Match : PaREP8 (HMM E-Value=2.4)
Length = 589
Score = 39.9 bits (89), Expect = 0.002
Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Frame = +2
Query: 248 EQHLRDRIKSKV-DEQFDQLEREYSDKIDGFHDNIQYFKDEHYSVSCQNGSVLKSKFAKI 424
E+++ D IK V DE+ Q ++ S+ ID N+Q+ + + C G+++K+ K
Sbjct: 49 EKYISDAIKDDVSDEELQQHKKNASEHIDPESQNLQFKCQSEHEILCMWGNIVKNPRLKC 108
Query: 425 LK--SHDYT 445
+K SHD++
Sbjct: 109 VKFDSHDFS 117
>SB_47506| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 391
Score = 33.1 bits (72), Expect = 0.21
Identities = 21/92 (22%), Positives = 52/92 (56%), Gaps = 4/92 (4%)
Frame = +2
Query: 245 QEQHLRDRIKSKVDEQFDQLEREYSDK----IDGFHDNIQYFKDEHYSVSCQNGSVLKSK 412
QE++L + KS++++Q QL+RE+S++ +D + +++ +DE+ + S +++
Sbjct: 29 QEENLVSKSKSQLEQQRLQLQREHSNEMEKMLDKTNSRLKHMEDEYATRSATAQETVRTL 88
Query: 413 FAKILKSHDYTDKKSIETYEKYCLPQLVDKHN 508
+I K + + + + +K + + +KHN
Sbjct: 89 EGEIKKLKEENLRMRLSSEKK--IGSVSEKHN 118
>SB_15799| Best HMM Match : PH (HMM E-Value=0.76)
Length = 836
Score = 31.5 bits (68), Expect = 0.65
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = +2
Query: 371 YSVSCQNGSVLKSKFAKILKSHDYTDKKSIET-YEKYCLPQLVDKHNTATWRYAC*SRDX 547
YS + VLKS F K+ +H + +I+ Y+ YC KH ++ R+ +
Sbjct: 4 YSENTSKDIVLKSGFRKLENTHSSSGDVTIKKFYDSYCTCS-AKKHRSSFVRHDR-THSL 61
Query: 548 RTAATKCYLLST 583
T TKC L T
Sbjct: 62 STVQTKCLLFDT 73
>SB_55028| Best HMM Match : Dynamitin (HMM E-Value=0.66)
Length = 1709
Score = 31.5 bits (68), Expect = 0.65
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +2
Query: 362 DEHYSVSCQNGSVLKSKFAKILKSHDYTDKKSIETYEKYCLPQL 493
D H+S++CQ+ + + +K HD+ S+ T ++C P L
Sbjct: 9 DRHHSLTCQSNAEVITKSYPGPSIHDFVTNTSLATIMQHCAPLL 52
>SB_30188| Best HMM Match : fn1 (HMM E-Value=0.48)
Length = 334
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +2
Query: 260 RDRIKSKVDEQFDQLEREYSDKIDGFHDNIQYFKDEHYSVSCQN 391
R+ +K KV + LEREY D + F+D + +D H ++ Q+
Sbjct: 234 RESLKLKVRDSTLWLEREYMDSFERFNDKLPAKEDFHSTMYDQH 277
>SB_32609| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 1741
Score = 29.9 bits (64), Expect = 2.0
Identities = 26/98 (26%), Positives = 39/98 (39%), Gaps = 1/98 (1%)
Frame = +2
Query: 191 KTRSHDV*HFGSYTKRYAQEQHLR-DRIKSKVDEQFDQLEREYSDKIDGFHDNIQYFKDE 367
K RS ++ S K Y E+ L+ R D L+R++ HD I
Sbjct: 1436 KVRSQEMFQCESCKKVYNTERGLKYHRALQHWKPSKDNLQRKFIGSKLQSHDRINV--KP 1493
Query: 368 HYSVSCQNGSVLKSKFAKILKSHDYTDKKSIETYEKYC 481
H + C+ G +S+ +K+H KS KYC
Sbjct: 1494 HQCIVCRKGFTARSRLLHHVKAHHNMKTKSNIFTCKYC 1531
>SB_6763| Best HMM Match : WD40 (HMM E-Value=4.6e-24)
Length = 208
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -2
Query: 196 GFVNCVFIILLMYTNSLVCSST*QSRITVWD 104
G VNCV+ I L+CS + S + VWD
Sbjct: 99 GHVNCVYQIAWSADCRLICSGSADSTLKVWD 129
>SB_21242| Best HMM Match : Prog_receptor (HMM E-Value=0.79)
Length = 1091
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +2
Query: 266 RIKSKVDEQFDQLEREYSDKIDGFHDNIQYFKDEH 370
R+KS ++ D L+ ++S +D HD I+ K+E+
Sbjct: 790 RVKS-LENSLDFLQAQHSQVLDNLHDEIERLKEEN 823
>SB_46289| Best HMM Match : DUF1690 (HMM E-Value=0.32)
Length = 947
Score = 29.1 bits (62), Expect = 3.5
Identities = 24/100 (24%), Positives = 46/100 (46%)
Frame = +2
Query: 176 EHAIDKTRSHDV*HFGSYTKRYAQEQHLRDRIKSKVDEQFDQLEREYSDKIDGFHDNIQY 355
EH + K SH + G ++ E+ + D +SKV + +E+E ++K+D H +I
Sbjct: 731 EHGL-KAESHMLIDDGFLSRVQHVEKRVIDA-QSKVSSELSAMEQEMAEKLDALHVDINT 788
Query: 356 FKDEHYSVSCQNGSVLKSKFAKILKSHDYTDKKSIETYEK 475
K +++ G + + +L + KS E +K
Sbjct: 789 AK----TLAGSMGHAITDRVNGVLNRAKQLELKSKERLQK 824
>SB_17656| Best HMM Match : TIR (HMM E-Value=1.3)
Length = 719
Score = 28.7 bits (61), Expect = 4.6
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +1
Query: 511 CYVAVCVLKPGFXNGSNQVLSFEYNPIGNKVIVPV 615
C V V +L PGF S +E+ K I+PV
Sbjct: 274 CSVFVPILTPGFQESSKHQQEYEFARANQKQIIPV 308
>SB_3185| Best HMM Match : Sec63 (HMM E-Value=0)
Length = 2590
Score = 28.7 bits (61), Expect = 4.6
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Frame = +2
Query: 296 DQLEREYSDKIDGFHDNIQYFKDEHYSVSCQNGSVLKSKFAKILKSHDYTD--KKSIETY 469
D+ RE+S+++ DN+ FK+E S C N + +S I K + T+ +K ++
Sbjct: 428 DKFRREFSERVGEVIDNLSEFKEESTSF-CSN--ISQSIGMLISKKSEETNDLQKQMDRM 484
Query: 470 EKYCLPQLVDKHNTA 514
L ++V+ N A
Sbjct: 485 ANDLLERMVEISNNA 499
>SB_806| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 228
Score = 28.3 bits (60), Expect = 6.1
Identities = 22/104 (21%), Positives = 43/104 (41%)
Frame = +2
Query: 194 TRSHDV*HFGSYTKRYAQEQHLRDRIKSKVDEQFDQLEREYSDKIDGFHDNIQYFKDEHY 373
T ++ V + + + + ++H+R I K + ++ I H I + D+H
Sbjct: 29 TNTYGVHIYDKHMRVHIYDKHMRVHIYDK-HIRIHIYDKHIRVHIYDKHIRIHIY-DKHI 86
Query: 374 SVSCQNGSVLKSKFAKILKSHDYTDKKSIETYEKYCLPQLVDKH 505
V N + + K ++ H Y I Y+K+ + DKH
Sbjct: 87 RVHIYNKHIRVHIYDKHIRVHIYDKHIRIHIYDKHIRVHIYDKH 130
>SB_55146| Best HMM Match : Synaptobrevin (HMM E-Value=1.4)
Length = 810
Score = 28.3 bits (60), Expect = 6.1
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +2
Query: 251 QHLRDRIKSKVDEQFDQLEREYSDKIDGFHDNI 349
QH D + + + Q+ R+++D G+H NI
Sbjct: 682 QHKNDDLAHYLSTDYKQVNRDFADNSSGYHFNI 714
>SB_22442| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 233
Score = 27.9 bits (59), Expect = 8.0
Identities = 15/68 (22%), Positives = 31/68 (45%)
Frame = -1
Query: 260 ANVVLARNASYRTRNVKHHENGFCQLRVHNLVNVHQLSGLFVHMTISNNRLGHVDFYRKN 81
++V++ + K E+ L+ N +V G + H+T+ N+ H+ +
Sbjct: 143 SHVIIIKGRYSHVTMSKGRESHVTMLKGRNS-HVTMRKGRYSHVTMMKNKDNHLTMRKGR 201
Query: 80 YTHFAMVK 57
Y+H M+K
Sbjct: 202 YSHVTMMK 209
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,748,438
Number of Sequences: 59808
Number of extensions: 404197
Number of successful extensions: 1153
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1018
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1140
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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