Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060279.seq
         (680 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40799-2|AAA81480.1|  712|Caenorhabditis elegans Hypothetical pr...    30   1.8  
Z82268-4|CAB05199.1|  741|Caenorhabditis elegans Hypothetical pr...    29   3.1  
Z81586-10|CAD56598.1|  349|Caenorhabditis elegans Hypothetical p...    29   4.1  
Z79757-3|CAC42307.1|  585|Caenorhabditis elegans Hypothetical pr...    29   4.1  
Z79757-2|CAB02129.2|  587|Caenorhabditis elegans Hypothetical pr...    29   4.1  
AF022980-3|AAG24187.2|  396|Caenorhabditis elegans Serpentine re...    29   4.1  
AF020788-1|AAC47809.1|  587|Caenorhabditis elegans SEL-10 protein.     29   4.1  
AF016655-9|AAK31440.1|  348|Caenorhabditis elegans Hypothetical ...    29   4.1  
Z49127-11|CAA88952.2|  452|Caenorhabditis elegans Hypothetical p...    28   7.1  
U61944-5|AAB03121.2|  482|Caenorhabditis elegans Hypothetical pr...    28   7.1  
AL033535-4|CAA22134.2|  452|Caenorhabditis elegans Hypothetical ...    28   7.1  
U23449-5|AAC24296.2|  365|Caenorhabditis elegans Hypothetical pr...    27   9.4  
AL132898-4|CAC14407.3|  968|Caenorhabditis elegans Hypothetical ...    27   9.4  
AL032632-9|CAA21588.2| 1464|Caenorhabditis elegans Hypothetical ...    27   9.4  

>U40799-2|AAA81480.1|  712|Caenorhabditis elegans Hypothetical
           protein F42C5.4 protein.
          Length = 712

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = +2

Query: 203 HDV*HFGSYTKRYAQEQHLRDRIKSKVDEQFDQLEREYSDKI 328
           H V  F +YT+   +E H++ R +S V++ F+ L R+  D +
Sbjct: 272 HFVKCFYTYTEPSDRESHVKGRWRSDVNKYFESLSRKNVDSV 313


>Z82268-4|CAB05199.1|  741|Caenorhabditis elegans Hypothetical
           protein F52B11.3 protein.
          Length = 741

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 21/65 (32%), Positives = 35/65 (53%)
 Frame = +2

Query: 317 SDKIDGFHDNIQYFKDEHYSVSCQNGSVLKSKFAKILKSHDYTDKKSIETYEKYCLPQLV 496
           S+KID ++DN    +      S  N   +K+   +I + +D+T  +S+E  E YCL + +
Sbjct: 194 SEKID-YYDNNCLSRQNRCGPSGGNLVFVKTTNFEI-RYYDHT--QSVEAQESYCLQKCL 249

Query: 497 DKHNT 511
           D  NT
Sbjct: 250 DSLNT 254


>Z81586-10|CAD56598.1|  349|Caenorhabditis elegans Hypothetical
           protein T05F1.13 protein.
          Length = 349

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +2

Query: 293 FDQLEREYSDKIDGFHDNIQYFKDEHYSVSCQNGSVLK 406
           FD +E E  DK    +   Q+++DE   + C NG  +K
Sbjct: 291 FDGIEYELFDK--NLNSGTQFYEDEEKKIDCLNGRNIK 326


>Z79757-3|CAC42307.1|  585|Caenorhabditis elegans Hypothetical
           protein F55B12.3b protein.
          Length = 585

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -2

Query: 199 TGFVNCVFIILLMYTNSLVCSST*QSRITVWDTSISTGK 83
           TG  N V+ +L     S+VCS +  + I VWD +   G+
Sbjct: 413 TGHNNRVYSLLFESERSIVCSGSLDTSIRVWDFTRPEGQ 451


>Z79757-2|CAB02129.2|  587|Caenorhabditis elegans Hypothetical
           protein F55B12.3a protein.
          Length = 587

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -2

Query: 199 TGFVNCVFIILLMYTNSLVCSST*QSRITVWDTSISTGK 83
           TG  N V+ +L     S+VCS +  + I VWD +   G+
Sbjct: 415 TGHNNRVYSLLFESERSIVCSGSLDTSIRVWDFTRPEGQ 453


>AF022980-3|AAG24187.2|  396|Caenorhabditis elegans Serpentine
           receptor, class w protein2 protein.
          Length = 396

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 6/79 (7%)
 Frame = -2

Query: 535 STRIPPRSSVVFVDQLGQ-TVFFVSFNRL-----FIGIIMTF*NFSKLAFQHAAILATYR 374
           +T  PP+  V +V+        F+ FN +     F  + +   + S L  +    ++ YR
Sbjct: 15  TTAKPPKEIVKYVEIPSWFDEVFLKFNYVIAILQFFAVAINLIHLSVLTRKELRAISIYR 74

Query: 373 IVFIFKILDVIVKSINFIA 317
           I+ +  ILD+I + ++FI+
Sbjct: 75  IMIVICILDIISEILSFIS 93


>AF020788-1|AAC47809.1|  587|Caenorhabditis elegans SEL-10 protein.
          Length = 587

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -2

Query: 199 TGFVNCVFIILLMYTNSLVCSST*QSRITVWDTSISTGK 83
           TG  N V+ +L     S+VCS +  + I VWD +   G+
Sbjct: 415 TGHNNRVYSLLFESERSIVCSGSLDTSIRVWDFTRPEGQ 453


>AF016655-9|AAK31440.1|  348|Caenorhabditis elegans Hypothetical
           protein C17F4.5 protein.
          Length = 348

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 20/74 (27%), Positives = 30/74 (40%)
 Frame = +2

Query: 260 RDRIKSKVDEQFDQLEREYSDKIDGFHDNIQYFKDEHYSVSCQNGSVLKSKFAKILKSHD 439
           R  ++S  D   D   R      DG  +NI+   + HY  +  N  ++K  FA      D
Sbjct: 205 RIHLESADDYTVDDFMRLIEKWADGTTENIKTAGNFHYKFTLSNPELVKQVFALSEVLGD 264

Query: 440 YTDKKSIETYEKYC 481
              K  I+ + K C
Sbjct: 265 AGKKDPIKFFGKVC 278


>Z49127-11|CAA88952.2|  452|Caenorhabditis elegans Hypothetical
           protein F13D12.9 protein.
          Length = 452

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +2

Query: 257 LRDRIKSKVDEQFDQLEREYSDKIDGFHDNIQYFKDEH-YSVSCQNGS 397
           L D +K   D  F +LE+    KID   D ++   D+H   + C  G+
Sbjct: 202 LFDEVKPVTDVDFVELEKAQYKKIDRLIDQLELKADDHVLEIGCGWGA 249


>U61944-5|AAB03121.2|  482|Caenorhabditis elegans Hypothetical
           protein T12E12.1 protein.
          Length = 482

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 9/28 (32%), Positives = 20/28 (71%)
 Frame = +2

Query: 218 FGSYTKRYAQEQHLRDRIKSKVDEQFDQ 301
           F +++K    E+ LRD+I+ K+D++ ++
Sbjct: 362 FENHSKSLKMEEELRDKIRKKIDDKVNE 389


>AL033535-4|CAA22134.2|  452|Caenorhabditis elegans Hypothetical
           protein F13D12.9 protein.
          Length = 452

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +2

Query: 257 LRDRIKSKVDEQFDQLEREYSDKIDGFHDNIQYFKDEH-YSVSCQNGS 397
           L D +K   D  F +LE+    KID   D ++   D+H   + C  G+
Sbjct: 202 LFDEVKPVTDVDFVELEKAQYKKIDRLIDQLELKADDHVLEIGCGWGA 249


>U23449-5|AAC24296.2|  365|Caenorhabditis elegans Hypothetical
           protein K06A1.1 protein.
          Length = 365

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/37 (27%), Positives = 22/37 (59%)
 Frame = +2

Query: 275 SKVDEQFDQLEREYSDKIDGFHDNIQYFKDEHYSVSC 385
           S+ DE+ ++ ++  S +   F++N++ F   H  +SC
Sbjct: 18  SQCDEEDEEEQQRQSSQRPPFYENMRTFAPSHMHISC 54


>AL132898-4|CAC14407.3|  968|Caenorhabditis elegans Hypothetical
           protein Y59A8B.6 protein.
          Length = 968

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
 Frame = +2

Query: 239 YAQEQHLRDRIKSKVDEQFDQ-----LEREYSDKIDGFHDNIQYFKDEHYSVSCQNGSVL 403
           Y QE    DRI ++VD++ D+      E++Y + ++ FH +    +     +  Q   V 
Sbjct: 107 YDQEDEDADRIYNEVDDRLDERHKERREKKYKELVELFHKDRPKIQQGFQDLKRQLAEVT 166

Query: 404 KSKFAKILKSHDYTDK 451
           + ++  I +  D  +K
Sbjct: 167 EDEWQAIPEVGDMRNK 182


>AL032632-9|CAA21588.2| 1464|Caenorhabditis elegans Hypothetical
            protein Y11D7A.14 protein.
          Length = 1464

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
 Frame = +2

Query: 233  KRYAQEQHLRDRIKSKVDEQFDQLEREYSDKIDGFHDNIQYFKDEH---YSVSCQNGSVL 403
            K+  +   L++  + + +E   +LER+  DK     D ++  KD H        Q    +
Sbjct: 1074 KQAKKIDELKEECRKRKNEA-SRLERKLEDKEAMMADCVKELKDSHKERLKEMEQKVEDV 1132

Query: 404  KSKFAKILKSHDYTDKKSIETYEK 475
            K K +K L++ + T K  IET+++
Sbjct: 1133 KRKNSK-LENENSTQKSQIETFQR 1155


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,781,290
Number of Sequences: 27780
Number of extensions: 316472
Number of successful extensions: 925
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 925
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)