Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060278.seq
(670 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual 50 2e-07
SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual 43 3e-05
SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb... 40 2e-04
SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces po... 34 0.016
SPBC31F10.07 |||cortical component Lsb5 |Schizosaccharomyces pom... 27 1.8
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 27 2.4
SPAC19A8.03 |||phosphatidylinositol-3-phosphatase |Schizosacchar... 27 2.4
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po... 27 3.2
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 26 4.3
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 26 5.6
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 26 5.6
SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom... 25 7.5
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 25 7.5
>SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 533
Score = 50.4 bits (115), Expect = 2e-07
Identities = 25/61 (40%), Positives = 38/61 (62%), Gaps = 2/61 (3%)
Frame = +2
Query: 260 TVVMYTLTVLETCVKNCGKPFHVLVCNKEFISELVKLIGPKNDPPTV--VQDKVLSLIQC 433
TV L +L+ CVKNCG F + + +KEF++ELV+ P+ P + +Q +LSLI+
Sbjct: 60 TVAYLALNLLDICVKNCGYAFRLQIASKEFLNELVRRF-PERPPSRLNKIQVMILSLIEE 118
Query: 434 W 436
W
Sbjct: 119 W 119
>SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual
Length = 510
Score = 43.2 bits (97), Expect = 3e-05
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Frame = +2
Query: 260 TVVMYTLTVLETCVKNCGKPFHVLVCNKEFISELVKLIGPKNDP---PTVVQDKVLSLIQ 430
TV L +L+ CVKNCG PFH + ++EF++ V N P +Q K+L +++
Sbjct: 59 TVSYLALHLLDICVKNCGYPFHFQIASEEFLNGFVSRF--PNHPISRMNKIQSKMLEMLE 116
Query: 431 CW 436
W
Sbjct: 117 EW 118
Score = 33.5 bits (73), Expect = 0.028
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = +3
Query: 90 STPVGQKIEQATDGALPSENWALNMEICDIINSST-DGPKDAIKAIRKRLTTSAGKTTQW 266
S + + I++ATD N ALN+EI D+IN + P++A I KR+ SA T +
Sbjct: 4 SQTLSKYIDKATDQFNLEPNLALNIEIADLINEKKGNTPREAALLILKRV-NSANPTVSY 62
>SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated
membrane proteins, ESCRT 0 complex|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 610
Score = 40.3 bits (90), Expect = 2e-04
Identities = 28/103 (27%), Positives = 48/103 (46%), Gaps = 1/103 (0%)
Frame = +2
Query: 224 KKKVDYKRWEDYTVVMYTLTVLETCVKNCGKPFHVLVCNKEFISELVKLIGPKNDPPTVV 403
K ++D+ + V + L + +TCVKN G F + + ++EF+ LV ++ V
Sbjct: 55 KSRIDHS---NPNVQIMALKLTDTCVKNGGSGFLLEIASREFMDNLVSILRSPAGIDEDV 111
Query: 404 QDKVLSLIQCWADAF-QNQAELQGVGQVYNELRTKGLNFR*PT 529
+ +L IQ WA A + L + VY L+ F P+
Sbjct: 112 KMVILRYIQSWALAVPDTNSPLSYIIHVYQNLKDGDYEFPEPS 154
>SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 373
Score = 34.3 bits (75), Expect = 0.016
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Frame = +3
Query: 111 IEQATDGALPSENWALNMEICDIINS-STDGPKDAIKAIRKRLTTS 245
I QATD E W + M+ CD ++S S D +++IK + KRL T+
Sbjct: 13 ILQATDEKNTKEKWDVIMDACDQLSSTSGDVGRNSIKFLNKRLDTA 58
>SPBC31F10.07 |||cortical component Lsb5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 304
Score = 27.5 bits (58), Expect = 1.8
Identities = 13/51 (25%), Positives = 28/51 (54%)
Frame = +3
Query: 93 TPVGQKIEQATDGALPSENWALNMEICDIINSSTDGPKDAIKAIRKRLTTS 245
T V I++ T E+ + +++ + +N + GP++A + +RK+L S
Sbjct: 11 TAVTTYIDRLTSRDTDDEDLSGIVQLSEAVNLTVTGPREASRTLRKKLKYS 61
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 27.1 bits (57), Expect = 2.4
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = -1
Query: 352 YKFLIADENMERLSTVFYACFQDSQRVHHHCVVFPALVVNLFLI 221
Y+ + DE R T +YA +SQ+VH +F L +N +I
Sbjct: 243 YEINLMDELTLRGVTQYYAFVDESQKVHCLNTLFSKLQINQSII 286
>SPAC19A8.03 |||phosphatidylinositol-3-phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 559
Score = 27.1 bits (57), Expect = 2.4
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = -3
Query: 272 TSPLCSLPSACSQPFSYCFNGIFRSV 195
TS LC+LP C P+ G F V
Sbjct: 349 TSQLCALPQLCLDPYYRTIEGFFALV 374
>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1313
Score = 26.6 bits (56), Expect = 3.2
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Frame = +2
Query: 386 DPPTVVQDKVLSLIQCWADAFQNQAE--LQGVGQ 481
DPP V++ + +CW D F A L+ +G+
Sbjct: 130 DPPDVIKPNPAAKYECWIDPFSLPASKALEAIGK 163
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 26.2 bits (55), Expect = 4.3
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -1
Query: 460 SLVLEGIGPTLDEAQYF 410
SL+ EG+ PTLDE F
Sbjct: 433 SLITEGVNPTLDEVSKF 449
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 25.8 bits (54), Expect = 5.6
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = +1
Query: 85 PFLRRWVKKLNKPQMAHYH 141
P RRW KLN PQMA+ H
Sbjct: 242 PTYRRW--KLNLPQMANLH 258
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 25.8 bits (54), Expect = 5.6
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +2
Query: 341 KEFISELVKLIGPKNDPPTVVQDKVLSLIQCWADAFQNQ 457
+ F+ +L KLI +P + +Q +LSLI+ A A Q +
Sbjct: 884 RSFLPDLFKLIKDFWNPHSNLQFTILSLIESLARAMQGE 922
>SPBC354.13 |rga6||GTPase activating protein
Rga6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 733
Score = 25.4 bits (53), Expect = 7.5
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +3
Query: 108 KIEQATDGALPSENWALNMEICDIINSSTD 197
KI +D A+PS ++A N+ +I+++TD
Sbjct: 640 KISTVSDTAVPSMSFANNISSRSVISAATD 669
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 25.4 bits (53), Expect = 7.5
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -3
Query: 122 GLFNFLTHRRRKGIPYTKKRHFCKIIKYLSID 27
G+ L+H G P T + FC I +LS D
Sbjct: 608 GIVAGLSHGPLHGFPLTNLQSFCTISSFLSND 639
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,130,149
Number of Sequences: 5004
Number of extensions: 72054
Number of successful extensions: 203
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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