Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060278.seq
(670 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0907 + 7128397-7128497,7129944-7130022,7130470-7130568,713... 63 2e-10
05_05_0201 + 23206859-23206998,23207858-23207936,23208121-232082... 61 9e-10
01_06_1193 - 35306608-35306777,35306869-35306890,35306988-353069... 58 6e-09
05_03_0582 - 15738503-15739301,15739385-15739642,15740585-157406... 58 8e-09
11_01_0620 - 4964263-4965052,4965578-4965663,4966332-4966413,496... 56 2e-08
02_02_0414 + 9972157-9972257,9972925-9973003,9973657-9973755,997... 56 2e-08
06_02_0206 + 13005863-13005966,13006918-13007080,13008534-130086... 55 6e-08
10_08_1044 + 22532596-22533114,22533425-22533688,22533926-22534306 53 2e-07
02_05_0402 + 28687597-28687671,28688123-28688235,28688927-286894... 52 5e-07
08_01_0063 + 439640-439740,440067-440145,440586-440684,440767-44... 39 0.003
01_01_0098 + 744582-745380,746107-746130,746500-747569 31 0.83
04_04_0579 - 26355431-26355684,26355988-26356073,26356292-263563... 30 1.9
04_04_0137 - 23053148-23053798,23053911-23054146,23054268-230544... 29 4.4
03_06_0636 - 35215034-35215336,35215417-35215584,35215599-352157... 29 4.4
03_06_0419 - 33789625-33789843,33790884-33791185,33791279-33792248 29 4.4
02_05_0752 + 31491462-31491921,31492177-31492271,31492346-314925... 29 4.4
04_04_0144 - 23095172-23095830,23095915-23097265 28 5.9
03_05_0499 + 24940443-24940994 28 5.9
>01_01_0907 +
7128397-7128497,7129944-7130022,7130470-7130568,
7130654-7130767,7130960-7131102,7131716-7131797,
7132425-7132510,7132879-7133112,7134684-7135162,
7135309-7136027
Length = 711
Score = 62.9 bits (146), Expect = 2e-10
Identities = 39/118 (33%), Positives = 64/118 (54%), Gaps = 1/118 (0%)
Frame = +2
Query: 224 KKKVDYKRWEDYTVVMYTLTVLETCVKNCGKPFHVLVCNKEFISELVKLIGPKNDPPTVV 403
KK++ +K + V + LT+LET +KNCG FH+ V ++ + E+VK++ K+D V
Sbjct: 44 KKRIGHKNPK---VQILALTLLETAIKNCGDIFHMHVAERDVLHEMVKIVKKKSDQN--V 98
Query: 404 QDKVLSLIQCWADAFQN-QAELQGVGQVYNELRTKGLNFR*PT*TPWPRFSRHSGVSR 574
++KVL++I W +AF +A Y++L G F + P P F+ S R
Sbjct: 99 KEKVLTMIDTWQEAFGGPRARYPQYYAAYHDLVRAGAAFPKRSDRPAPLFNGQSPAGR 156
Score = 48.0 bits (109), Expect = 7e-06
Identities = 20/45 (44%), Positives = 28/45 (62%)
Frame = +3
Query: 102 GQKIEQATDGALPSENWALNMEICDIINSSTDGPKDAIKAIRKRL 236
G +++AT L +WA NMEICDI N KD +KA++KR+
Sbjct: 3 GSMVDRATSDMLIGPDWAKNMEICDICNRDPGQSKDVVKALKKRI 47
>05_05_0201 +
23206859-23206998,23207858-23207936,23208121-23208219,
23208561-23208674,23208762-23208910,23209010-23209091,
23209170-23209255,23209520-23209750,23209830-23210727
Length = 625
Score = 60.9 bits (141), Expect = 9e-10
Identities = 36/99 (36%), Positives = 56/99 (56%), Gaps = 1/99 (1%)
Frame = +2
Query: 224 KKKVDYKRWEDYTVVMYTLTVLETCVKNCGKPFHVLVCNKEFISELVKLIGPKNDPPTVV 403
KK++ +K D V +TLT+LET +KNCG+ H V + + E+V+++ K+D T V
Sbjct: 57 KKRLQHK---DPRVQFFTLTLLETMMKNCGEYVHFEVVEQHILQEMVRIVQKKHD--TQV 111
Query: 404 QDKVLSLIQCWADAFQNQ-AELQGVGQVYNELRTKGLNF 517
+DKVL L+ W +AF + Y EL+ G+ F
Sbjct: 112 RDKVLILLDSWQEAFGGPGGKYPQYYWSYIELKRSGIMF 150
Score = 51.2 bits (117), Expect = 7e-07
Identities = 20/51 (39%), Positives = 32/51 (62%)
Frame = +3
Query: 84 PFSTPVGQKIEQATDGALPSENWALNMEICDIINSSTDGPKDAIKAIRKRL 236
P P ++++AT L +WA+N+EICD +N+ KD +KA++KRL
Sbjct: 10 PARLPASTRVDKATSHLLQGPDWAINLEICDTLNADRWQTKDVVKAVKKRL 60
>01_06_1193 -
35306608-35306777,35306869-35306890,35306988-35306996,
35307107-35307115,35307470-35307491,35307981-35308784,
35308861-35309088,35309250-35309335,35309449-35309530,
35309630-35309778,35309992-35310105,35310961-35311059,
35311243-35311321,35311873-35312021
Length = 673
Score = 58.0 bits (134), Expect = 6e-09
Identities = 28/66 (42%), Positives = 42/66 (63%)
Frame = +2
Query: 251 EDYTVVMYTLTVLETCVKNCGKPFHVLVCNKEFISELVKLIGPKNDPPTVVQDKVLSLIQ 430
+D V Y LT+LET +KNCG+ + V + + E+VK+I KND +V+DK+L L+
Sbjct: 66 KDPKVQFYALTLLETMMKNCGEYVQLEVAEQHVLQEMVKIIQKKND--MLVRDKILLLLD 123
Query: 431 CWADAF 448
W +AF
Sbjct: 124 SWQEAF 129
Score = 51.2 bits (117), Expect = 7e-07
Identities = 21/43 (48%), Positives = 31/43 (72%)
Frame = +3
Query: 108 KIEQATDGALPSENWALNMEICDIINSSTDGPKDAIKAIRKRL 236
++E+AT L +WA+N+EICDIIN+ KD +KA++KRL
Sbjct: 21 RVEKATSHLLMGPDWAVNLEICDIINADVWQTKDVVKAVKKRL 63
>05_03_0582 -
15738503-15739301,15739385-15739642,15740585-15740670,
15740879-15740960,15741044-15741213,15742081-15742194,
15742984-15743082,15743171-15743249,15744604-15744710
Length = 597
Score = 57.6 bits (133), Expect = 8e-09
Identities = 32/99 (32%), Positives = 55/99 (55%), Gaps = 1/99 (1%)
Frame = +2
Query: 224 KKKVDYKRWEDYTVVMYTLTVLETCVKNCGKPFHVLVCNKEFISELVKLIGPKNDPPTVV 403
KK++ +K + V + LT+LET +KNCG H V ++ + E++K++ K D +
Sbjct: 46 KKRLQHKNSK---VQFFALTLLETLMKNCGDHVHSQVVERDILQEMIKIVKKKTD--MQL 100
Query: 404 QDKVLSLIQCWADAF-QNQAELQGVGQVYNELRTKGLNF 517
+DK+L L++ W +AF N + Y E++ GL F
Sbjct: 101 RDKILVLLESWQEAFGGNGGKHPQYYWAYAEMKKLGLEF 139
Score = 45.2 bits (102), Expect = 5e-05
Identities = 18/43 (41%), Positives = 29/43 (67%)
Frame = +3
Query: 108 KIEQATDGALPSENWALNMEICDIINSSTDGPKDAIKAIRKRL 236
++++AT L +W LN++ICD +NS K+ IKA++KRL
Sbjct: 7 RVDKATSELLLGPDWTLNIDICDAVNSDHGQAKEVIKALKKRL 49
>11_01_0620 -
4964263-4965052,4965578-4965663,4966332-4966413,
4967052-4967156,4967600-4967772,4967988-4968101,
4973939-4974037,4974320-4974398,4975424-4975492,
4975955-4976061
Length = 567
Score = 56.4 bits (130), Expect = 2e-08
Identities = 32/86 (37%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Frame = +2
Query: 263 VVMYTLTVLETCVKNCGKPFHVLVCNKEFISELVKLIGPKNDPPTVVQDKVLSLIQCWAD 442
V + TL VLET KNCG + + ++ +SE+VK++ K P V++K+LSLI W
Sbjct: 79 VQILTLYVLETLSKNCGDVVYQQIIERDILSEMVKIV--KKKPDLNVREKILSLIDTWQV 136
Query: 443 AFQN-QAELQGVGQVYNELRTKGLNF 517
AF Y ELR G++F
Sbjct: 137 AFGGASGRYPQYHAAYQELRNAGVDF 162
Score = 33.5 bits (73), Expect = 0.16
Identities = 13/24 (54%), Positives = 18/24 (75%)
Frame = +3
Query: 114 EQATDGALPSENWALNMEICDIIN 185
E+AT L +WA+N+E+CDIIN
Sbjct: 9 ERATSDMLIGPDWAVNIELCDIIN 32
>02_02_0414 +
9972157-9972257,9972925-9973003,9973657-9973755,
9973848-9973913,9974225-9974376,9974503-9974584,
9974696-9974781,9974919-9975098,9975320-9975717,
9976192-9976790,9977141-9977239
Length = 646
Score = 56.4 bits (130), Expect = 2e-08
Identities = 29/81 (35%), Positives = 49/81 (60%)
Frame = +2
Query: 218 SNKKKVDYKRWEDYTVVMYTLTVLETCVKNCGKPFHVLVCNKEFISELVKLIGPKNDPPT 397
S KK++ ++ + V + LT+LET +KNCG H+ V K+ + E+VK++ K P
Sbjct: 42 SIKKRIAHRNAK---VQLLALTLLETMIKNCGDIVHMQVAEKDILHEMVKIV--KKRPDF 96
Query: 398 VVQDKVLSLIQCWADAFQNQA 460
V++K+L+LI W + F +A
Sbjct: 97 HVKEKILTLIDTWQEVFGGRA 117
Score = 45.6 bits (103), Expect = 4e-05
Identities = 17/42 (40%), Positives = 29/42 (69%)
Frame = +3
Query: 111 IEQATDGALPSENWALNMEICDIINSSTDGPKDAIKAIRKRL 236
+++AT+ L +WA+N+EICD +N KD +K+I+KR+
Sbjct: 6 VDRATNDMLIGPDWAMNLEICDTLNRDPGQAKDVVKSIKKRI 47
>06_02_0206 +
13005863-13005966,13006918-13007080,13008534-13008632,
13008704-13008817,13009094-13009254,13009746-13009827,
13009972-13010057,13011563-13011742,13011913-13012424,
13012844-13013478
Length = 711
Score = 54.8 bits (126), Expect = 6e-08
Identities = 34/101 (33%), Positives = 54/101 (53%), Gaps = 1/101 (0%)
Frame = +2
Query: 218 SNKKKVDYKRWEDYTVVMYTLTVLETCVKNCGKPFHVLVCNKEFISELVKLIGPKNDPPT 397
S KK++ +K + + + LT+LET +KNCG H+ V ++ + E+VK+ K P
Sbjct: 71 SIKKRIGHKNSK---IQLLALTLLETLIKNCGDFVHMHVAERDILHEMVKI--AKKKPDY 125
Query: 398 VVQDKVLSLIQCWADAF-QNQAELQGVGQVYNELRTKGLNF 517
V++K+L LI W +AF ++A Y EL G F
Sbjct: 126 HVKEKILILIDTWQEAFGGSRARYPQYYVAYQELLRAGAVF 166
Score = 34.7 bits (76), Expect = 0.067
Identities = 13/30 (43%), Positives = 21/30 (70%)
Frame = +3
Query: 96 PVGQKIEQATDGALPSENWALNMEICDIIN 185
P +++AT +L +W+LN+EICDI+N
Sbjct: 2 PQSVLVDRATSESLIGPDWSLNLEICDILN 31
>10_08_1044 + 22532596-22533114,22533425-22533688,22533926-22534306
Length = 387
Score = 52.8 bits (121), Expect = 2e-07
Identities = 31/82 (37%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Frame = +2
Query: 278 LTVLETCVKNCGKPFHVLVCNKEFISELVKLIGPKNDPPTVV--QDKVLSLIQCWADAFQ 451
L +LET VKNC K F + + + E+VKLI +DP TVV ++K L LI+ W ++
Sbjct: 105 LVLLETVVKNCEKAFSEIAAER-VLDEMVKLI---DDPQTVVNNRNKALMLIEAWGESGD 160
Query: 452 NQAELQGVGQVYNELRTKGLNF 517
L + Y LR++G+ F
Sbjct: 161 ELRYLPVYEETYKSLRSRGIRF 182
Score = 39.5 bits (88), Expect = 0.002
Identities = 14/42 (33%), Positives = 29/42 (69%)
Frame = +3
Query: 111 IEQATDGALPSENWALNMEICDIINSSTDGPKDAIKAIRKRL 236
+++AT + + +WA N+EICD++N+ + I+AI++R+
Sbjct: 52 VDEATLETMDAPDWATNLEICDMVNTGNVNSIELIRAIKRRI 93
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +1
Query: 514 FPMTDLDAMAPIFTPQRSVP 573
FP D +++APIFTP RS P
Sbjct: 182 FPGRDDESLAPIFTPPRSAP 201
>02_05_0402 +
28687597-28687671,28688123-28688235,28688927-28689432,
28689544-28689717,28689953-28690082,28692241-28692772,
28693578-28693823,28694648-28695061
Length = 729
Score = 51.6 bits (118), Expect = 5e-07
Identities = 32/91 (35%), Positives = 50/91 (54%), Gaps = 2/91 (2%)
Frame = +2
Query: 251 EDYTVVMYTLTVLETCVKNCGKPFHVLVCNKEFISELVKLIGPKNDPPTVV--QDKVLSL 424
+D V +L +LET VKNC K F V + + E+V+LI +DP TVV ++K L L
Sbjct: 433 KDARVQYLSLVLLETIVKNCEKAFSE-VAAERVLDEMVRLI---DDPQTVVNNRNKALML 488
Query: 425 IQCWADAFQNQAELQGVGQVYNELRTKGLNF 517
I+ W ++ L + Y L+++G+ F
Sbjct: 489 IEAWGESGDELRYLPVYEETYKSLKSRGVRF 519
Score = 44.8 bits (101), Expect = 6e-05
Identities = 18/48 (37%), Positives = 30/48 (62%)
Frame = +3
Query: 93 TPVGQKIEQATDGALPSENWALNMEICDIINSSTDGPKDAIKAIRKRL 236
TP + +E+AT L +W+ N+EICD+IN+ + I+ I+KR+
Sbjct: 383 TPADKIVEEATSENLDGPDWSANLEICDLINTEKVNSVELIRGIKKRI 430
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +1
Query: 514 FPMTDLDAMAPIFTPQRSVPD 576
FP D +++APIFTP RSV +
Sbjct: 519 FPGRDNESLAPIFTPARSVAE 539
>08_01_0063 +
439640-439740,440067-440145,440586-440684,440767-440880,
441218-441381,442237-442312,442502-442587,442706-442861,
442934-443264
Length = 401
Score = 39.1 bits (87), Expect = 0.003
Identities = 20/53 (37%), Positives = 29/53 (54%)
Frame = +3
Query: 105 QKIEQATDGALPSENWALNMEICDIINSSTDGPKDAIKAIRKRLTTSAGKTTQ 263
+ ++ AT L +WA N+EIC+++ KD IK I+K L S K TQ
Sbjct: 4 EMVKAATSEKLKEMDWAKNIEICELVAQDPGKAKDVIKPIKKYL-GSRSKNTQ 55
Score = 37.9 bits (84), Expect = 0.007
Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Frame = +2
Query: 269 MYTLTVLETCVKNCGKPFHVLVCNKEFISELVKLIGPKNDPPTVVQDKVLSLIQCWADAF 448
+Y + +LE + NCG+P H V + + LVK++ K + P V++K+ L+ +
Sbjct: 56 LYAVMLLEMLMNNCGEPIHKQVIDNGLLPILVKIVKKKTELP--VREKIFLLLDATQTSL 113
Query: 449 QN-QAELQGVGQVYNELRTKGLNF 517
+ + Y EL + G+ F
Sbjct: 114 GGVKGKFPQYYGAYYELVSAGVQF 137
>01_01_0098 + 744582-745380,746107-746130,746500-747569
Length = 630
Score = 31.1 bits (67), Expect = 0.83
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = +2
Query: 314 KPFHVLVCNKEFISELVKLIGPKNDPPTVVQDKVLSLIQCWAD 442
+P ++ C+KEF + +I N TV+ DKV+ LI C D
Sbjct: 135 EPGRIVRCSKEFTTSRASMIDGYN---TVIADKVVRLIPCLRD 174
>04_04_0579 -
26355431-26355684,26355988-26356073,26356292-26356377,
26356596-26356788,26356895-26357094,26359257-26359379
Length = 313
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +3
Query: 39 IFYYFTKMSFFGVGNPFSTPVGQKIEQ 119
++ +F +S +GVG P P GQ+IEQ
Sbjct: 61 LWNHFYPLSAYGVGTPVRLPSGQEIEQ 87
>04_04_0137 -
23053148-23053798,23053911-23054146,23054268-23054458,
23054587-23056010
Length = 833
Score = 28.7 bits (61), Expect = 4.4
Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 2/89 (2%)
Frame = +2
Query: 365 KLIGPKNDPPTVVQDKVLSLIQCWADAFQNQAELQGVGQVYNELR-TK-GLNFR*PT*TP 538
+L GPK +P +D ++L AD+ + Y+ELR TK G N P+ +
Sbjct: 212 ELAGPKEEPRCEEEDSGVALSDDGADSVHSSCCFHSSHFSYSELRDTKPGSNGVSPSPSG 271
Query: 539 WPRFSRHSGVSRMALNKLVPLSAPSCRRT 625
R + V+ NK +P C RT
Sbjct: 272 RSRRRSSAPVTPSEKNKAASPYSPQCPRT 300
>03_06_0636 -
35215034-35215336,35215417-35215584,35215599-35215799,
35215877-35215962,35216037-35216229,35216304-35216489
Length = 378
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -3
Query: 386 HFWGQSILPTLI*IPYCRREHG 321
+FWG ++ PT +PY RR HG
Sbjct: 158 NFWG-NVYPTYAALPYLRRSHG 178
>03_06_0419 - 33789625-33789843,33790884-33791185,33791279-33792248
Length = 496
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +1
Query: 571 PDGVEQVGSPQRSVLPQNSSS-RTTSGTDH 657
PDGV VGS P +SS TTSG++H
Sbjct: 125 PDGVAMVGSGHPMAAPVHSSPLATTSGSNH 154
>02_05_0752 +
31491462-31491921,31492177-31492271,31492346-31492573,
31493070-31493157,31493275-31493326,31493985-31494050,
31494382-31494536,31494633-31494703,31494820-31495017,
31495103-31495144,31496223-31496324,31496514-31496603,
31496708-31496783,31497299-31497395,31497488-31497557,
31497676-31497852,31498156-31498239,31498971-31499093,
31500143-31500226,31500318-31500502,31500592-31500730,
31500841-31500900,31500969-31501040,31501136-31501197,
31501839-31501945,31501984-31502058,31502800-31503248
Length = 1168
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +2
Query: 542 PRFSRHSGVSRMALNKL-VPLSAPSCRRTLLAGQLPE 649
P++SR SG+S++ N L VPL +R + Q+ E
Sbjct: 497 PKYSRSSGISKLFTNSLIVPLPEEDEQRRIFNNQIEE 533
>04_04_0144 - 23095172-23095830,23095915-23097265
Length = 669
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -1
Query: 580 RHPGHSAVA*KSGPWRLSRSSEIQTFGAKLVVHLT 476
R G+ A + PWRLS+ +++ +FG L+ LT
Sbjct: 525 RVAGYRAPEVVADPWRLSQKADVYSFGVLLLELLT 559
>03_05_0499 + 24940443-24940994
Length = 183
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +2
Query: 539 WPRFSRHSGVSRMALNKLVPLSAPSCRRTLLAGQLP 646
W R R+ + R L+ L PL P CRR A P
Sbjct: 123 WLREKRNCPLCRAVLSSLPPLPNPGCRRGRAAPPCP 158
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,316,902
Number of Sequences: 37544
Number of extensions: 507628
Number of successful extensions: 1367
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1299
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1360
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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