Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060278.seq
         (670 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1457| Best HMM Match : VHS (HMM E-Value=2e-31)                      71   6e-13
SB_6150| Best HMM Match : GAT (HMM E-Value=2.3e-34)                    70   1e-12
SB_53310| Best HMM Match : VHS (HMM E-Value=0)                         66   3e-11
SB_18055| Best HMM Match : No HMM Matches (HMM E-Value=.)              56   2e-08
SB_21830| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_15566| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_12737| Best HMM Match : C_tripleX (HMM E-Value=0.027)               29   2.6  
SB_59145| Best HMM Match : Keratin_B2 (HMM E-Value=0.0012)             29   2.6  
SB_48483| Best HMM Match : SH3_1 (HMM E-Value=7.1e-23)                 29   4.5  
SB_4415| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.0  

>SB_1457| Best HMM Match : VHS (HMM E-Value=2e-31)
          Length = 892

 Score = 71.3 bits (167), Expect = 6e-13
 Identities = 35/85 (41%), Positives = 50/85 (58%)
 Frame = +2

Query: 263 VVMYTLTVLETCVKNCGKPFHVLVCNKEFISELVKLIGPKNDPPTVVQDKVLSLIQCWAD 442
           V  Y LTVLE C+KNCG   H  +  K+F+ E+  LI    DP   V+DK L LIQ W+ 
Sbjct: 128 VAKYALTVLEACMKNCGSIIHDEIATKDFMDEMRNLIKNGADP---VKDKALGLIQTWSH 184

Query: 443 AFQNQAELQGVGQVYNELRTKGLNF 517
           AF+N+ + + V   +N ++ +G  F
Sbjct: 185 AFRNEPKYKIVQDTFNLMKMEGCKF 209


>SB_6150| Best HMM Match : GAT (HMM E-Value=2.3e-34)
          Length = 674

 Score = 70.1 bits (164), Expect = 1e-12
 Identities = 30/43 (69%), Positives = 37/43 (86%)
 Frame = +3

Query: 117 QATDGALPSENWALNMEICDIINSSTDGPKDAIKAIRKRLTTS 245
           +ATDG L SE+W+LN+EICDIIN + +GPKDA KAIRKRLT +
Sbjct: 2   RATDGGLASEDWSLNLEICDIINETDEGPKDAAKAIRKRLTNN 44



 Score = 64.9 bits (151), Expect = 6e-11
 Identities = 26/47 (55%), Positives = 35/47 (74%)
 Frame = +2

Query: 251 EDYTVVMYTLTVLETCVKNCGKPFHVLVCNKEFISELVKLIGPKNDP 391
           +++  V+ TLTVLE+C+KNCG  FHVLV  KEF+ E+ KL+ PK  P
Sbjct: 45  KNFKSVLLTLTVLESCIKNCGHRFHVLVAKKEFLDEMTKLLSPKQSP 91


>SB_53310| Best HMM Match : VHS (HMM E-Value=0)
          Length = 253

 Score = 65.7 bits (153), Expect = 3e-11
 Identities = 28/84 (33%), Positives = 50/84 (59%)
 Frame = +2

Query: 263 VVMYTLTVLETCVKNCGKPFHVLVCNKEFISELVKLIGPKNDPPTVVQDKVLSLIQCWAD 442
           + M  LT+L  CV NCGK FH+ +C+++F+SE   ++  +  P   V DK   LI+ W +
Sbjct: 92  IAMQALTLLSACVNNCGKVFHLEICSRDFVSEAKSILLSRTHPK--VMDKFKELIKEWVN 149

Query: 443 AFQNQAELQGVGQVYNELRTKGLN 514
            F+   +L  +  +  +L+T+G++
Sbjct: 150 MFKEDPQLSLISVMCEQLKTEGVD 173



 Score = 45.2 bits (102), Expect = 5e-05
 Identities = 20/41 (48%), Positives = 29/41 (70%)
 Frame = +3

Query: 114 EQATDGALPSENWALNMEICDIINSSTDGPKDAIKAIRKRL 236
           E+AT     +E+W + MEICD I  S +GPKDA+++I KR+
Sbjct: 45  EKATSELNTTEDWQIIMEICDKIPRSPNGPKDALRSIMKRV 85


>SB_18055| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 61

 Score = 56.4 bits (130), Expect = 2e-08
 Identities = 23/44 (52%), Positives = 33/44 (75%)
 Frame = +2

Query: 386 DPPTVVQDKVLSLIQCWADAFQNQAELQGVGQVYNELRTKGLNF 517
           +PP VVQ+K+LSLIQ WADAF+N  ++  + Q Y  LR++G+ F
Sbjct: 2   NPPQVVQEKILSLIQDWADAFRNSPDMSAILQTYEGLRSQGIEF 45



 Score = 32.7 bits (71), Expect = 0.28
 Identities = 13/21 (61%), Positives = 15/21 (71%)
 Frame = +1

Query: 502 QRFEFPMTDLDAMAPIFTPQR 564
           Q  EFP  DLD ++PIFTP R
Sbjct: 41  QGIEFPPKDLDTLSPIFTPHR 61


>SB_21830| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 280

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 12/47 (25%), Positives = 27/47 (57%)
 Frame = -1

Query: 316 LSTVFYACFQDSQRVHHHCVVFPALVVNLFLIALMASLGPSVLLFII 176
           L+  +   FQ+S R HHH      +++N+ +I ++ ++   +++ II
Sbjct: 184 LAICYSVSFQNSNRYHHHHHHHIIIIINIIIIIIIINIIIIIIIIII 230


>SB_15566| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1265

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 16/58 (27%), Positives = 29/58 (50%)
 Frame = -1

Query: 295  CFQDSQRVHHHCVVFPALVVNLFLIALMASLGPSVLLFIISHISMFRAQFSDGNAPSV 122
            CF    RV  H   F  +VV L+ ++ + S GP  +   + H+ ++    S+G+  S+
Sbjct: 1198 CFVVGARVFPHLPEFAMMVVQLYRVSWIVSSGPGSVSSHLMHLFLYPPS-SNGSISSI 1254


>SB_12737| Best HMM Match : C_tripleX (HMM E-Value=0.027)
          Length = 442

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -3

Query: 587 CSTPSGTLRCGVKIGAMASKSVIGNSNLWCEAR 489
           C T   T+RCG  +G    K + G   + CEAR
Sbjct: 143 CITGRCTMRCGRGVGRCEQKCLAGKCAMICEAR 175


>SB_59145| Best HMM Match : Keratin_B2 (HMM E-Value=0.0012)
          Length = 489

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -3

Query: 587 CSTPSGTLRCGVKIGAMASKSVIGNSNLWCEAR 489
           C T   T+RCG  +G    K + G   + CEAR
Sbjct: 143 CITGRCTMRCGRGVGRCEQKCLAGKCAMICEAR 175


>SB_48483| Best HMM Match : SH3_1 (HMM E-Value=7.1e-23)
          Length = 936

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +1

Query: 490 RASHQRFEFPMTD-LDAMAPIFTPQRSVPDGVEQVGSPQRSVLPQNSSSRTTS 645
           R  H    FP+TD L +   +FTPQRS     +++   Q    P  SSS  T+
Sbjct: 546 RLYHLHIVFPLTDRLYSSQNVFTPQRSSLLVTDRLYPSQIVFTPHRSSSPLTN 598


>SB_4415| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 640

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -1

Query: 166 SMFRA-QFSDGNAPSVACSIF*PTGVEKGFP 77
           S++R+  F DGN PS A  I+    V KG P
Sbjct: 95  SLYRSLDFEDGNEPSFASDIYQTVHVSKGSP 125


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,874,121
Number of Sequences: 59808
Number of extensions: 555546
Number of successful extensions: 1221
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1219
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)