Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060278.seq
(670 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41542-4|AAK39154.1| 437|Caenorhabditis elegans Hypothetical pr... 125 3e-29
U41542-3|AAK39156.1| 403|Caenorhabditis elegans Hypothetical pr... 125 3e-29
U58751-7|AAB00658.2| 729|Caenorhabditis elegans Hepatocyte grow... 67 1e-11
U97407-8|AAN84851.1| 397|Caenorhabditis elegans Prion-like-(q/n... 37 0.011
U97407-7|AAB52480.2| 457|Caenorhabditis elegans Prion-like-(q/n... 37 0.011
Z68014-4|CAA92026.2| 588|Caenorhabditis elegans Hypothetical pr... 34 0.10
Z81552-2|CAB04485.1| 331|Caenorhabditis elegans Hypothetical pr... 31 0.98
Z81552-1|CAB04484.1| 331|Caenorhabditis elegans Hypothetical pr... 31 0.98
X94702-1|CAA64363.1| 331|Caenorhabditis elegans pes-2 protein. 31 0.98
X94701-1|CAA64362.1| 331|Caenorhabditis elegans pes-2 protein. 31 0.98
Z75527-2|CAA99775.2| 636|Caenorhabditis elegans Hypothetical pr... 29 3.0
AF370361-1|AAK52514.1| 636|Caenorhabditis elegans putative tran... 29 3.0
AB096001-1|BAE53417.1| 676|Caenorhabditis elegans bHLH-PAS fact... 29 3.0
AF016449-17|AAG24005.1| 306|Caenorhabditis elegans Hypothetical... 29 3.9
Z83116-9|CAD89748.1| 374|Caenorhabditis elegans Hypothetical pr... 28 5.2
AF067945-11|AAV28330.1| 1604|Caenorhabditis elegans Mechanosenso... 28 5.2
AF067945-10|AAV28329.1| 1818|Caenorhabditis elegans Mechanosenso... 28 5.2
AF067945-9|AAV28328.1| 1954|Caenorhabditis elegans Mechanosensor... 28 5.2
AF067945-5|AAV28325.1| 1685|Caenorhabditis elegans Mechanosensor... 28 5.2
AF067945-4|AAV28327.1| 1995|Caenorhabditis elegans Mechanosensor... 28 5.2
AF067945-3|AAV28331.1| 2006|Caenorhabditis elegans Mechanosensor... 28 5.2
AF067945-2|AAV28324.1| 2007|Caenorhabditis elegans Mechanosensor... 28 5.2
U58086-1|AAC47123.1| 803|Caenorhabditis elegans CUL-4 protein. 28 6.9
U29536-1|AAA68791.3| 840|Caenorhabditis elegans Cullin protein ... 28 6.9
AF116529-1|AAD05570.1| 961|Caenorhabditis elegans synthetic mul... 28 6.9
AF077541-9|AAC64633.1| 909|Caenorhabditis elegans Cysteinyl trn... 28 6.9
AF077541-8|AAK68426.1| 908|Caenorhabditis elegans Cysteinyl trn... 28 6.9
AF003145-9|AAT68904.1| 585|Caenorhabditis elegans Hypothetical ... 28 6.9
AF003145-8|AAB57721.2| 700|Caenorhabditis elegans Hypothetical ... 28 6.9
AF000195-1|AAC24266.2| 961|Caenorhabditis elegans Abnormal cell... 28 6.9
>U41542-4|AAK39154.1| 437|Caenorhabditis elegans Hypothetical
protein C07A12.7a protein.
Length = 437
Score = 125 bits (301), Expect = 3e-29
Identities = 56/98 (57%), Positives = 74/98 (75%)
Frame = +2
Query: 224 KKKVDYKRWEDYTVVMYTLTVLETCVKNCGKPFHVLVCNKEFISELVKLIGPKNDPPTVV 403
KK++ ++ VVMYTLTVLET VKNC FHVLVCNK+F+ +L+KLIGPK D P ++
Sbjct: 82 KKRLHNAMSKNNAVVMYTLTVLETAVKNCNHHFHVLVCNKDFVQDLIKLIGPKFDAPQII 141
Query: 404 QDKVLSLIQCWADAFQNQAELQGVGQVYNELRTKGLNF 517
Q++VLSLIQ WADAF+ L GV Q Y++L++KG+ F
Sbjct: 142 QERVLSLIQAWADAFRGDPTLAGVVQSYDDLKSKGVEF 179
Score = 85.8 bits (203), Expect = 2e-17
Identities = 39/66 (59%), Positives = 50/66 (75%), Gaps = 1/66 (1%)
Frame = +3
Query: 60 MSFFGVGNPFSTPVGQKIEQATDG-ALPSENWALNMEICDIINSSTDGPKDAIKAIRKRL 236
+S F GNPF+TPVG+KIE ATD L +ENW LNMEICD IN + DGP+DA++A++KRL
Sbjct: 26 VSDFFQGNPFATPVGRKIELATDANLLATENWGLNMEICDFINGTEDGPRDAVRALKKRL 85
Query: 237 TTSAGK 254
+ K
Sbjct: 86 HNAMSK 91
Score = 32.3 bits (70), Expect = 0.32
Identities = 13/20 (65%), Positives = 16/20 (80%)
Frame = +1
Query: 511 EFPMTDLDAMAPIFTPQRSV 570
EFP DLD +API TP+R+V
Sbjct: 178 EFPAADLDTLAPIKTPKRTV 197
>U41542-3|AAK39156.1| 403|Caenorhabditis elegans Hypothetical
protein C07A12.7b protein.
Length = 403
Score = 125 bits (301), Expect = 3e-29
Identities = 56/98 (57%), Positives = 74/98 (75%)
Frame = +2
Query: 224 KKKVDYKRWEDYTVVMYTLTVLETCVKNCGKPFHVLVCNKEFISELVKLIGPKNDPPTVV 403
KK++ ++ VVMYTLTVLET VKNC FHVLVCNK+F+ +L+KLIGPK D P ++
Sbjct: 82 KKRLHNAMSKNNAVVMYTLTVLETAVKNCNHHFHVLVCNKDFVQDLIKLIGPKFDAPQII 141
Query: 404 QDKVLSLIQCWADAFQNQAELQGVGQVYNELRTKGLNF 517
Q++VLSLIQ WADAF+ L GV Q Y++L++KG+ F
Sbjct: 142 QERVLSLIQAWADAFRGDPTLAGVVQSYDDLKSKGVEF 179
Score = 85.8 bits (203), Expect = 2e-17
Identities = 39/66 (59%), Positives = 50/66 (75%), Gaps = 1/66 (1%)
Frame = +3
Query: 60 MSFFGVGNPFSTPVGQKIEQATDG-ALPSENWALNMEICDIINSSTDGPKDAIKAIRKRL 236
+S F GNPF+TPVG+KIE ATD L +ENW LNMEICD IN + DGP+DA++A++KRL
Sbjct: 26 VSDFFQGNPFATPVGRKIELATDANLLATENWGLNMEICDFINGTEDGPRDAVRALKKRL 85
Query: 237 TTSAGK 254
+ K
Sbjct: 86 HNAMSK 91
Score = 30.7 bits (66), Expect = 0.98
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = +1
Query: 511 EFPMTDLDAMAPIFTPQRS 567
EFP DLD +API TP+R+
Sbjct: 178 EFPAADLDTLAPIKTPKRT 196
>U58751-7|AAB00658.2| 729|Caenorhabditis elegans Hepatocyte growth
factor-regulatedtk substrate (hrs) family protein 1
protein.
Length = 729
Score = 66.9 bits (156), Expect = 1e-11
Identities = 33/89 (37%), Positives = 51/89 (57%)
Frame = +2
Query: 251 EDYTVVMYTLTVLETCVKNCGKPFHVLVCNKEFISELVKLIGPKNDPPTVVQDKVLSLIQ 430
E+ VV +TL VL+ CVKNCG H V +EF+ + L+ + V++K L ++Q
Sbjct: 53 ENPHVVNHTLLVLDACVKNCGHKVHAEVATREFMEDFKNLV--TENKYDEVKNKSLEMLQ 110
Query: 431 CWADAFQNQAELQGVGQVYNELRTKGLNF 517
CWA AF N+ E + V +N ++ G +F
Sbjct: 111 CWATAFANKPEYKMVVDTHNLMKLAGFDF 139
Score = 33.1 bits (72), Expect = 0.18
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = +3
Query: 90 STPVGQKIEQATDGALPSENWALNMEICDIINSSTDGPKDAIKAIRKRL 236
+T + ++QATD L NW + D+I S K +++AIRKR+
Sbjct: 2 ATKFQRVLDQATDSTLVEPNWEGIILCTDMIRSGEVPAKPSLQAIRKRM 50
>U97407-8|AAN84851.1| 397|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 19,
isoform b protein.
Length = 397
Score = 37.1 bits (82), Expect = 0.011
Identities = 15/31 (48%), Positives = 21/31 (67%)
Frame = +3
Query: 144 ENWALNMEICDIINSSTDGPKDAIKAIRKRL 236
ENW + CD+IN+ +G K IK++RKRL
Sbjct: 19 ENWEGILAFCDMINNDFEGSKTGIKSLRKRL 49
Score = 35.5 bits (78), Expect = 0.034
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Frame = +2
Query: 254 DYTVVMYTLTVLETCVKNCGKPFHVLVCNKEFISELVKLIGPKNDPPTVVQDKVLSLIQC 433
D VV+ ++VL++C NC + F V + +FI+EL L V +K+ +Q
Sbjct: 53 DPHVVLLAISVLDSCWANCEERFRKEVSSAQFINELKALC---TSSQRQVAEKMRLTVQK 109
Query: 434 WADA-FQNQAELQGVGQVYNELRTKGLNF 517
W D + + L + ++ L G +F
Sbjct: 110 WVDTECKTEQSLSLIVTLHKNLVADGYSF 138
>U97407-7|AAB52480.2| 457|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 19,
isoform a protein.
Length = 457
Score = 37.1 bits (82), Expect = 0.011
Identities = 15/31 (48%), Positives = 21/31 (67%)
Frame = +3
Query: 144 ENWALNMEICDIINSSTDGPKDAIKAIRKRL 236
ENW + CD+IN+ +G K IK++RKRL
Sbjct: 27 ENWEGILAFCDMINNDFEGSKTGIKSLRKRL 57
Score = 35.5 bits (78), Expect = 0.034
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Frame = +2
Query: 254 DYTVVMYTLTVLETCVKNCGKPFHVLVCNKEFISELVKLIGPKNDPPTVVQDKVLSLIQC 433
D VV+ ++VL++C NC + F V + +FI+EL L V +K+ +Q
Sbjct: 61 DPHVVLLAISVLDSCWANCEERFRKEVSSAQFINELKALC---TSSQRQVAEKMRLTVQK 117
Query: 434 WADA-FQNQAELQGVGQVYNELRTKGLNF 517
W D + + L + ++ L G +F
Sbjct: 118 WVDTECKTEQSLSLIVTLHKNLVADGYSF 146
>Z68014-4|CAA92026.2| 588|Caenorhabditis elegans Hypothetical
protein W04G3.4 protein.
Length = 588
Score = 33.9 bits (74), Expect = 0.10
Identities = 23/80 (28%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Frame = +2
Query: 269 MYTLTVLETCVKNCGKPFHVLVCNKEFISELVKLIGPK-NDPPT--VVQDKVLSLIQCWA 439
M T+ L+ V+N G+ H +F++ELV+LI PK N T ++ +++ L+ W
Sbjct: 64 MLTIRALDYLVRNGGEKVHERCGRYKFLNELVRLIAPKYNGKLTSDALKTEIIKLLFIWQ 123
Query: 440 DAFQNQAELQGVGQVYNELR 499
+ ++ + + QVY L+
Sbjct: 124 LSIKHIPKYK---QVYESLK 140
>Z81552-2|CAB04485.1| 331|Caenorhabditis elegans Hypothetical
protein F56G4.3 protein.
Length = 331
Score = 30.7 bits (66), Expect = 0.98
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = -2
Query: 432 HWMRLNTLSCTTVGGSFLGPINFTNSDINSLLQTRTWNGFPQFF 301
HWM ++TL T L FTN DIN ++ F + F
Sbjct: 230 HWMTIDTLKDFTACSVILYDCKFTNKDINEFIKLWKNKEFERIF 273
>Z81552-1|CAB04484.1| 331|Caenorhabditis elegans Hypothetical
protein F56G4.2 protein.
Length = 331
Score = 30.7 bits (66), Expect = 0.98
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = -2
Query: 432 HWMRLNTLSCTTVGGSFLGPINFTNSDINSLLQTRTWNGFPQFF 301
HWM ++TL T L FTN DIN ++ F + F
Sbjct: 230 HWMTIDTLKDFTACSVILYDCKFTNKDINEFIKLWKNKEFERIF 273
>X94702-1|CAA64363.1| 331|Caenorhabditis elegans pes-2 protein.
Length = 331
Score = 30.7 bits (66), Expect = 0.98
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = -2
Query: 432 HWMRLNTLSCTTVGGSFLGPINFTNSDINSLLQTRTWNGFPQFF 301
HWM ++TL T L FTN DIN ++ F + F
Sbjct: 230 HWMTIDTLKDFTACSVILYDCKFTNKDINEFIKLWKNKEFERIF 273
>X94701-1|CAA64362.1| 331|Caenorhabditis elegans pes-2 protein.
Length = 331
Score = 30.7 bits (66), Expect = 0.98
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = -2
Query: 432 HWMRLNTLSCTTVGGSFLGPINFTNSDINSLLQTRTWNGFPQFF 301
HWM ++TL T L FTN DIN ++ F + F
Sbjct: 230 HWMTIDTLKDFTACSVILYDCKFTNKDINEFIKLWKNKEFERIF 273
>Z75527-2|CAA99775.2| 636|Caenorhabditis elegans Hypothetical
protein C15C8.2 protein.
Length = 636
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +1
Query: 505 RFEFPMTDLDAMAPIFTPQRSVPDGVEQVGSPQRSVLPQNSS 630
+ E PM ++ P+FTP+ S P E S S+LP +++
Sbjct: 489 KVEIPMRPINTQIPLFTPESSSP---ESSASLHTSLLPHHNA 527
>AF370361-1|AAK52514.1| 636|Caenorhabditis elegans putative
transcription factor C15C8.2protein.
Length = 636
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +1
Query: 505 RFEFPMTDLDAMAPIFTPQRSVPDGVEQVGSPQRSVLPQNSS 630
+ E PM ++ P+FTP+ S P E S S+LP +++
Sbjct: 489 KVEIPMRPINTQIPLFTPESSSP---ESSASLHTSLLPHHNA 527
>AB096001-1|BAE53417.1| 676|Caenorhabditis elegans bHLH-PAS factor
protein.
Length = 676
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +1
Query: 505 RFEFPMTDLDAMAPIFTPQRSVPDGVEQVGSPQRSVLPQNSS 630
+ E PM ++ P+FTP+ S P E S S+LP +++
Sbjct: 489 KVEIPMRPINTQIPLFTPESSSP---ESSASLHTSLLPHHNA 527
>AF016449-17|AAG24005.1| 306|Caenorhabditis elegans Hypothetical
protein C50H11.17 protein.
Length = 306
Score = 28.7 bits (61), Expect = 3.9
Identities = 22/73 (30%), Positives = 30/73 (41%)
Frame = -1
Query: 484 HLTDSL*FSLVLEGIGPTLDEAQYFVLHHRRRIIFGANQFYQL*YKFLIADENMERLSTV 305
H DSL LV + PT E YF H + + N Y+ + L +E R
Sbjct: 189 HKNDSLFHELVSKRCDPTCMETSYFSEDHTNKTVELCNVMYEDAFN-LCLNEVKPREDAN 247
Query: 304 FYACFQDSQRVHH 266
+ CF D R H+
Sbjct: 248 SFPCFIDG-RFHN 259
>Z83116-9|CAD89748.1| 374|Caenorhabditis elegans Hypothetical
protein M01B2.11 protein.
Length = 374
Score = 28.3 bits (60), Expect = 5.2
Identities = 9/16 (56%), Positives = 15/16 (93%)
Frame = +1
Query: 91 LRRWVKKLNKPQMAHY 138
++RWV+K+NKP++A Y
Sbjct: 156 MKRWVEKINKPRVAIY 171
>AF067945-11|AAV28330.1| 1604|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform g protein.
Length = 1604
Score = 28.3 bits (60), Expect = 5.2
Identities = 18/53 (33%), Positives = 22/53 (41%)
Frame = -3
Query: 305 FLRMFPGQSACTSPLCSLPSACSQPFSYCFNGIFRSVRTAVYYIAYFHVQSPI 147
F M Q C SP L AC QPF + + + YY YF + S I
Sbjct: 966 FADMTVCQDLCESPPRELTQACLQPFDTTYETSCSAEKPQQYY--YFDMSSGI 1016
>AF067945-10|AAV28329.1| 1818|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform f protein.
Length = 1818
Score = 28.3 bits (60), Expect = 5.2
Identities = 18/53 (33%), Positives = 22/53 (41%)
Frame = -3
Query: 305 FLRMFPGQSACTSPLCSLPSACSQPFSYCFNGIFRSVRTAVYYIAYFHVQSPI 147
F M Q C SP L AC QPF + + + YY YF + S I
Sbjct: 1180 FADMTVCQDLCESPPRELTQACLQPFDTTYETSCSAEKPQQYY--YFDMSSGI 1230
>AF067945-9|AAV28328.1| 1954|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform e protein.
Length = 1954
Score = 28.3 bits (60), Expect = 5.2
Identities = 18/53 (33%), Positives = 22/53 (41%)
Frame = -3
Query: 305 FLRMFPGQSACTSPLCSLPSACSQPFSYCFNGIFRSVRTAVYYIAYFHVQSPI 147
F M Q C SP L AC QPF + + + YY YF + S I
Sbjct: 1316 FADMTVCQDLCESPPRELTQACLQPFDTTYETSCSAEKPQQYY--YFDMSSGI 1366
>AF067945-5|AAV28325.1| 1685|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform b protein.
Length = 1685
Score = 28.3 bits (60), Expect = 5.2
Identities = 18/53 (33%), Positives = 22/53 (41%)
Frame = -3
Query: 305 FLRMFPGQSACTSPLCSLPSACSQPFSYCFNGIFRSVRTAVYYIAYFHVQSPI 147
F M Q C SP L AC QPF + + + YY YF + S I
Sbjct: 1365 FADMTVCQDLCESPPRELTQACLQPFDTTYETSCSAEKPQQYY--YFDMSSGI 1415
>AF067945-4|AAV28327.1| 1995|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform d protein.
Length = 1995
Score = 28.3 bits (60), Expect = 5.2
Identities = 18/53 (33%), Positives = 22/53 (41%)
Frame = -3
Query: 305 FLRMFPGQSACTSPLCSLPSACSQPFSYCFNGIFRSVRTAVYYIAYFHVQSPI 147
F M Q C SP L AC QPF + + + YY YF + S I
Sbjct: 1357 FADMTVCQDLCESPPRELTQACLQPFDTTYETSCSAEKPQQYY--YFDMSSGI 1407
>AF067945-3|AAV28331.1| 2006|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform h protein.
Length = 2006
Score = 28.3 bits (60), Expect = 5.2
Identities = 18/53 (33%), Positives = 22/53 (41%)
Frame = -3
Query: 305 FLRMFPGQSACTSPLCSLPSACSQPFSYCFNGIFRSVRTAVYYIAYFHVQSPI 147
F M Q C SP L AC QPF + + + YY YF + S I
Sbjct: 1368 FADMTVCQDLCESPPRELTQACLQPFDTTYETSCSAEKPQQYY--YFDMSSGI 1418
>AF067945-2|AAV28324.1| 2007|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform a protein.
Length = 2007
Score = 28.3 bits (60), Expect = 5.2
Identities = 18/53 (33%), Positives = 22/53 (41%)
Frame = -3
Query: 305 FLRMFPGQSACTSPLCSLPSACSQPFSYCFNGIFRSVRTAVYYIAYFHVQSPI 147
F M Q C SP L AC QPF + + + YY YF + S I
Sbjct: 1369 FADMTVCQDLCESPPRELTQACLQPFDTTYETSCSAEKPQQYY--YFDMSSGI 1419
>U58086-1|AAC47123.1| 803|Caenorhabditis elegans CUL-4 protein.
Length = 803
Score = 27.9 bits (59), Expect = 6.9
Identities = 15/56 (26%), Positives = 23/56 (41%)
Frame = -3
Query: 329 EHGTAFHSFLRMFPGQSACTSPLCSLPSACSQPFSYCFNGIFRSVRTAVYYIAYFH 162
+ G A FL A LC L + C F+Y G+F+ + + Y F+
Sbjct: 488 KRGLAKRLFLERSASVDAEKMVLCKLKTECGSAFTYKLEGMFKDMDASENYGRLFN 543
>U29536-1|AAA68791.3| 840|Caenorhabditis elegans Cullin protein 4
protein.
Length = 840
Score = 27.9 bits (59), Expect = 6.9
Identities = 15/56 (26%), Positives = 23/56 (41%)
Frame = -3
Query: 329 EHGTAFHSFLRMFPGQSACTSPLCSLPSACSQPFSYCFNGIFRSVRTAVYYIAYFH 162
+ G A FL A LC L + C F+Y G+F+ + + Y F+
Sbjct: 525 KRGLAKRLFLERSASVDAEKMVLCKLKTECGSAFTYKLEGMFKDMDASENYGRLFN 580
>AF116529-1|AAD05570.1| 961|Caenorhabditis elegans synthetic
multivulva protein LIN-35 Rb protein.
Length = 961
Score = 27.9 bits (59), Expect = 6.9
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Frame = +1
Query: 493 ASHQRFEFPMTD-LDAMAPI-FTPQRSVPDGVEQVGSPQRSVLPQNSSSRT 639
A Q F D L++ +PI FTP + D +++G P ++PQN +SRT
Sbjct: 697 AHFQEFGEDWADKLNSYSPIKFTPIKKPDDLRDELGRP---IVPQNQTSRT 744
>AF077541-9|AAC64633.1| 909|Caenorhabditis elegans Cysteinyl trna
synthetase protein1, isoform a protein.
Length = 909
Score = 27.9 bits (59), Expect = 6.9
Identities = 14/47 (29%), Positives = 20/47 (42%)
Frame = -1
Query: 382 FGANQFYQL*YKFLIADENMERLSTVFYACFQDSQRVHHHCVVFPAL 242
FG + L L A N + + C + R HHHC++ P L
Sbjct: 114 FGTTRSKNLVRVLLFASFNRNQTQLFAWNCSKLQLRSHHHCIMDPNL 160
>AF077541-8|AAK68426.1| 908|Caenorhabditis elegans Cysteinyl trna
synthetase protein1, isoform b protein.
Length = 908
Score = 27.9 bits (59), Expect = 6.9
Identities = 14/47 (29%), Positives = 20/47 (42%)
Frame = -1
Query: 382 FGANQFYQL*YKFLIADENMERLSTVFYACFQDSQRVHHHCVVFPAL 242
FG + L L A N + + C + R HHHC++ P L
Sbjct: 114 FGTTRSKNLVRVLLFASFNRNQTQLFAWNCSKLQLRSHHHCIMDPNL 160
>AF003145-9|AAT68904.1| 585|Caenorhabditis elegans Hypothetical
protein B0414.8b protein.
Length = 585
Score = 27.9 bits (59), Expect = 6.9
Identities = 9/32 (28%), Positives = 21/32 (65%)
Frame = +1
Query: 22 IASIDKYFIILQKCRFLV*GIPFLRRWVKKLN 117
+ ++D+YF + CR+++ G+ FL ++ +N
Sbjct: 303 VRALDRYFRKISTCRYVIPGLDFLPLTIELIN 334
>AF003145-8|AAB57721.2| 700|Caenorhabditis elegans Hypothetical
protein B0414.8a protein.
Length = 700
Score = 27.9 bits (59), Expect = 6.9
Identities = 9/32 (28%), Positives = 21/32 (65%)
Frame = +1
Query: 22 IASIDKYFIILQKCRFLV*GIPFLRRWVKKLN 117
+ ++D+YF + CR+++ G+ FL ++ +N
Sbjct: 303 VRALDRYFRKISTCRYVIPGLDFLPLTIELIN 334
>AF000195-1|AAC24266.2| 961|Caenorhabditis elegans Abnormal cell
lineage protein 35 protein.
Length = 961
Score = 27.9 bits (59), Expect = 6.9
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Frame = +1
Query: 493 ASHQRFEFPMTD-LDAMAPI-FTPQRSVPDGVEQVGSPQRSVLPQNSSSRT 639
A Q F D L++ +PI FTP + D +++G P ++PQN +SRT
Sbjct: 697 AHFQEFGEDWADKLNSYSPIKFTPIKKPDDLRDELGRP---IVPQNQTSRT 744
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,709,418
Number of Sequences: 27780
Number of extensions: 424425
Number of successful extensions: 1114
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 1045
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1111
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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