Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060278.seq
         (670 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    22   6.1  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   8.0  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   8.0  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   8.0  

>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +1

Query: 94  RRWVKKLNKPQMAHYHP 144
           RRWV  +++P    Y P
Sbjct: 454 RRWVSTMSRPFEVRYDP 470


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +2

Query: 68  FWCRESLFYAGGSKN*TSHRWRI 136
           FW R +L  + G +N  S RW +
Sbjct: 187 FWERRTLQISDGIENIGSIRWEL 209


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +2

Query: 68  FWCRESLFYAGGSKN*TSHRWRI 136
           FW R +L  + G +N  S RW +
Sbjct: 240 FWERRTLQISDGIENIGSIRWEL 262


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +2

Query: 452 NQAELQGVGQVYNELRTKGL 511
           +QAELQ + +  ++L+ KGL
Sbjct: 101 SQAELQSLLKTADQLKIKGL 120


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,874
Number of Sequences: 438
Number of extensions: 5180
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)