Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060278.seq
(670 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g38410.1 68415.m04718 VHS domain-containing protein / GAT dom... 60 2e-09
At1g21380.1 68414.m02675 VHS domain-containing protein / GAT dom... 60 2e-09
At5g16880.3 68418.m01977 VHS domain-containing protein / GAT dom... 55 4e-08
At5g16880.2 68418.m01979 VHS domain-containing protein / GAT dom... 55 4e-08
At5g16880.1 68418.m01978 VHS domain-containing protein / GAT dom... 55 4e-08
At1g76970.1 68414.m08962 VHS domain-containing protein / GAT dom... 54 7e-08
At5g01760.1 68418.m00095 VHS domain-containing protein / GAT dom... 53 2e-07
At3g08790.1 68416.m01021 VHS domain-containing protein / GAT dom... 53 2e-07
At4g32760.1 68417.m04661 VHS domain-containing protein / GAT dom... 49 3e-06
At5g63640.1 68418.m07990 VHS domain-containing protein / GAT dom... 39 0.003
At1g06210.2 68414.m00653 VHS domain-containing protein / GAT dom... 35 0.043
At1g06210.1 68414.m00654 VHS domain-containing protein / GAT dom... 35 0.043
At5g20560.1 68418.m02441 beta-1,3-glucanase, putative similar to... 29 2.8
At5g20320.1 68418.m02418 DEAD/DEAH box helicase, putative simila... 29 3.7
At5g09670.2 68418.m01119 loricrin-related contains weak similari... 29 3.7
At5g09670.1 68418.m01118 loricrin-related contains weak similari... 29 3.7
At3g11325.1 68416.m01377 hypothetical protein 29 3.7
At5g55030.2 68418.m06856 expressed protein 28 4.9
At5g55030.1 68418.m06855 expressed protein 28 4.9
At5g17960.1 68418.m02106 DC1 domain-containing protein contains ... 28 4.9
At3g62270.1 68416.m06996 anion exchange family protein contains ... 28 4.9
At3g02890.1 68416.m00284 PHD finger protein-related contains low... 28 4.9
At5g39970.1 68418.m04847 expressed protein low similarity to up-... 28 6.5
At2g02700.1 68415.m00210 DC1 domain-containing protein contains ... 28 6.5
At1g35610.1 68414.m04421 DC1 domain-containing protein contains ... 28 6.5
At5g40030.1 68418.m04854 protein kinase, putative similar to stp... 27 8.5
At3g13760.1 68416.m01736 DC1 domain-containing protein contains ... 27 8.5
At3g11660.1 68416.m01429 harpin-induced family protein / HIN1 fa... 27 8.5
At2g21235.1 68415.m02522 bZIP protein-related similar to VirE2-i... 27 8.5
>At2g38410.1 68415.m04718 VHS domain-containing protein / GAT
domain-containing protein weak similarity to hepatocyte
growth factor-regulated tyrosine kinase substrate HRS
isoform 2 [Homo sapiens] GI:9022389; contains Pfam
profiles PF00790: VHS domain, PF03127: GAT domain
Length = 671
Score = 59.7 bits (138), Expect = 2e-09
Identities = 35/99 (35%), Positives = 52/99 (52%), Gaps = 1/99 (1%)
Frame = +2
Query: 224 KKKVDYKRWEDYTVVMYTLTVLETCVKNCGKPFHVLVCNKEFISELVKLIGPKNDPPTVV 403
KK++ +K V + LT+LET VKNCG H V K + E+VK++ K D V
Sbjct: 50 KKRLQHK---SSRVQLLALTLLETLVKNCGDYLHHQVAEKNILGEMVKIVKKKAD--MQV 104
Query: 404 QDKVLSLIQCWADAFQN-QAELQGVGQVYNELRTKGLNF 517
+DK+L ++ W AF + + Y+ELR G+ F
Sbjct: 105 RDKILVMVDSWQQAFGGPEGKYPQYYWAYDELRRSGVEF 143
Score = 44.8 bits (101), Expect = 5e-05
Identities = 19/42 (45%), Positives = 27/42 (64%)
Frame = +3
Query: 111 IEQATDGALPSENWALNMEICDIINSSTDGPKDAIKAIRKRL 236
+++AT L +W NMEICD +NS KD +KA++KRL
Sbjct: 12 VDKATSDLLLGPDWTTNMEICDSVNSLHWQAKDVVKAVKKRL 53
>At1g21380.1 68414.m02675 VHS domain-containing protein / GAT
domain-containing protein weak similarity to Hrs [Rattus
norvegicus] GI:8547026; contains Pfam profiles PF00790:
VHS domain, PF03127: GAT domain
Length = 506
Score = 59.7 bits (138), Expect = 2e-09
Identities = 32/98 (32%), Positives = 53/98 (54%), Gaps = 1/98 (1%)
Frame = +2
Query: 263 VVMYTLTVLETCVKNCGKPFHVLVCNKEFISELVKLIGPKNDPPTVVQDKVLSLIQCWAD 442
V + L LET KNCG+ + L+ +++ + ++VK++ K P V++K+LSL+ W +
Sbjct: 57 VQILALYALETLSKNCGESVYQLIVDRDILPDMVKIV--KKKPDLTVREKILSLLDTWQE 114
Query: 443 AFQNQ-AELQGVGQVYNELRTKGLNFR*PT*TPWPRFS 553
AF YNELR+ G+ F T + P F+
Sbjct: 115 AFGGSGGRFPQYYNAYNELRSAGIEFPPRTESSVPFFT 152
Score = 48.0 bits (109), Expect = 6e-06
Identities = 20/47 (42%), Positives = 31/47 (65%)
Frame = +3
Query: 114 EQATDGALPSENWALNMEICDIINSSTDGPKDAIKAIRKRLTTSAGK 254
E+AT+ L +WA+N+E+CDIIN K+A+K ++KRL + K
Sbjct: 10 ERATNDMLIGPDWAINIELCDIINMEPSQAKEAVKVLKKRLGSKNSK 56
>At5g16880.3 68418.m01977 VHS domain-containing protein / GAT
domain-containing protein weak similarity to hepatocyte
growth factor-regulated tyrosine kinase substrate [Homo
sapiens] GI:2731383; contains Pfam profiles PF00790: VHS
domain, PF03127: GAT domain
Length = 297
Score = 55.2 bits (127), Expect = 4e-08
Identities = 32/82 (39%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Frame = +2
Query: 278 LTVLETCVKNCGKPFHVLVCNKEFISELVKLIGPKNDPPTVV--QDKVLSLIQCWADAFQ 451
L +LETCVKNC K F V + + E+VKLI +DP TVV ++K L LI+ W ++
Sbjct: 105 LVLLETCVKNCEKAFSE-VAAERVLDEMVKLI---DDPQTVVNNRNKALMLIEAWGESTS 160
Query: 452 NQAELQGVGQVYNELRTKGLNF 517
L + Y L+ +G+ F
Sbjct: 161 ELRYLPVFEETYKSLKARGIRF 182
Score = 43.2 bits (97), Expect = 2e-04
Identities = 18/47 (38%), Positives = 28/47 (59%)
Frame = +3
Query: 96 PVGQKIEQATDGALPSENWALNMEICDIINSSTDGPKDAIKAIRKRL 236
P + +E AT L +W +N+EICD+IN T + I+ I+KR+
Sbjct: 47 PTDKIVEDATTENLEEPDWDMNLEICDMINQETINSVELIRGIKKRI 93
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +1
Query: 514 FPMTDLDAMAPIFTPQRSVP 573
FP D +++APIFTP RS P
Sbjct: 182 FPGRDNESLAPIFTPARSTP 201
>At5g16880.2 68418.m01979 VHS domain-containing protein / GAT
domain-containing protein weak similarity to hepatocyte
growth factor-regulated tyrosine kinase substrate [Homo
sapiens] GI:2731383; contains Pfam profiles PF00790: VHS
domain, PF03127: GAT domain
Length = 407
Score = 55.2 bits (127), Expect = 4e-08
Identities = 32/82 (39%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Frame = +2
Query: 278 LTVLETCVKNCGKPFHVLVCNKEFISELVKLIGPKNDPPTVV--QDKVLSLIQCWADAFQ 451
L +LETCVKNC K F V + + E+VKLI +DP TVV ++K L LI+ W ++
Sbjct: 105 LVLLETCVKNCEKAFSE-VAAERVLDEMVKLI---DDPQTVVNNRNKALMLIEAWGESTS 160
Query: 452 NQAELQGVGQVYNELRTKGLNF 517
L + Y L+ +G+ F
Sbjct: 161 ELRYLPVFEETYKSLKARGIRF 182
Score = 43.2 bits (97), Expect = 2e-04
Identities = 18/47 (38%), Positives = 28/47 (59%)
Frame = +3
Query: 96 PVGQKIEQATDGALPSENWALNMEICDIINSSTDGPKDAIKAIRKRL 236
P + +E AT L +W +N+EICD+IN T + I+ I+KR+
Sbjct: 47 PTDKIVEDATTENLEEPDWDMNLEICDMINQETINSVELIRGIKKRI 93
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +1
Query: 514 FPMTDLDAMAPIFTPQRSVP 573
FP D +++APIFTP RS P
Sbjct: 182 FPGRDNESLAPIFTPARSTP 201
>At5g16880.1 68418.m01978 VHS domain-containing protein / GAT
domain-containing protein weak similarity to hepatocyte
growth factor-regulated tyrosine kinase substrate [Homo
sapiens] GI:2731383; contains Pfam profiles PF00790: VHS
domain, PF03127: GAT domain
Length = 407
Score = 55.2 bits (127), Expect = 4e-08
Identities = 32/82 (39%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Frame = +2
Query: 278 LTVLETCVKNCGKPFHVLVCNKEFISELVKLIGPKNDPPTVV--QDKVLSLIQCWADAFQ 451
L +LETCVKNC K F V + + E+VKLI +DP TVV ++K L LI+ W ++
Sbjct: 105 LVLLETCVKNCEKAFSE-VAAERVLDEMVKLI---DDPQTVVNNRNKALMLIEAWGESTS 160
Query: 452 NQAELQGVGQVYNELRTKGLNF 517
L + Y L+ +G+ F
Sbjct: 161 ELRYLPVFEETYKSLKARGIRF 182
Score = 43.2 bits (97), Expect = 2e-04
Identities = 18/47 (38%), Positives = 28/47 (59%)
Frame = +3
Query: 96 PVGQKIEQATDGALPSENWALNMEICDIINSSTDGPKDAIKAIRKRL 236
P + +E AT L +W +N+EICD+IN T + I+ I+KR+
Sbjct: 47 PTDKIVEDATTENLEEPDWDMNLEICDMINQETINSVELIRGIKKRI 93
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +1
Query: 514 FPMTDLDAMAPIFTPQRSVP 573
FP D +++APIFTP RS P
Sbjct: 182 FPGRDNESLAPIFTPARSTP 201
>At1g76970.1 68414.m08962 VHS domain-containing protein / GAT
domain-containing protein weak similarity to
HGF-regulated tyrosine kinase substrate [Mus musculus]
GI:1089781; contains Pfam profiles PF00790: VHS domain,
PF03127: GAT domain
Length = 446
Score = 54.4 bits (125), Expect = 7e-08
Identities = 27/86 (31%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Frame = +2
Query: 263 VVMYTLTVLETCVKNCGKPFHVLVCNKEFISELVKLIGPKNDPPTVVQDKVLSLIQCWAD 442
V + L LET KNCG+ + L+ ++ ++++VK++ K P V++K+L+L+ W +
Sbjct: 57 VQILALYALETLSKNCGENVYQLIIDRGLLNDMVKIV--KKKPELNVREKILTLLDTWQE 114
Query: 443 AFQNQ-AELQGVGQVYNELRTKGLNF 517
AF + YN+LR+ G+ F
Sbjct: 115 AFGGRGGRYPQYYNAYNDLRSAGIEF 140
Score = 47.2 bits (107), Expect = 1e-05
Identities = 19/47 (40%), Positives = 31/47 (65%)
Frame = +3
Query: 114 EQATDGALPSENWALNMEICDIINSSTDGPKDAIKAIRKRLTTSAGK 254
E+AT+ L +WA+N+E+CD+IN K+A+K ++KRL + K
Sbjct: 10 ERATNDMLIGPDWAINIELCDLINMDPSQAKEAVKVLKKRLGSKNSK 56
>At5g01760.1 68418.m00095 VHS domain-containing protein / GAT
domain-containing protein weak similarity to Hrs [Rattus
norvegicus] GI:8547026; contains Pfam profiles PF00790:
VHS domain, PF03127: GAT domain
Length = 542
Score = 52.8 bits (121), Expect = 2e-07
Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Frame = +2
Query: 263 VVMYTLTVLETCVKNCGKPFHVLVCNKEFISELVKLIGPKNDPPTVVQDKVLSLIQCWAD 442
V + TLT+LE +KNCG H + K + ++VKL+ K D V++K+L L+ W +
Sbjct: 74 VQLLTLTLLEAMLKNCGDFVHSHIAEKHLLEDMVKLVRKKGD--FEVRNKLLILLDTWNE 131
Query: 443 AFQNQA-ELQGVGQVYNELRTKGLNF 517
AF A + Y EL+ G+ F
Sbjct: 132 AFSGVACKHPHYNWAYQELKRCGVKF 157
Score = 39.9 bits (89), Expect = 0.001
Identities = 17/42 (40%), Positives = 29/42 (69%)
Frame = +3
Query: 111 IEQATDGALPSENWALNMEICDIINSSTDGPKDAIKAIRKRL 236
+++AT L + +W + + ICD +NS+ KDAIKA+++RL
Sbjct: 26 VDKATSELLRTPDWTIIIAICDSLNSNRWQCKDAIKAVKRRL 67
>At3g08790.1 68416.m01021 VHS domain-containing protein / GAT
domain-containing protein weak similarity to
HGF-regulated tyrosine kinase substrate [Mus musculus]
GI:1089781; contains Pfam profiles PF00790: VHS domain,
PF03127: GAT domain
Length = 607
Score = 52.8 bits (121), Expect = 2e-07
Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Frame = +2
Query: 263 VVMYTLTVLETCVKNCGKPFHVLVCNKEFISELVKLIGPKNDPPTVVQDKVLSLIQCWAD 442
V + LT+LET + NCG+ H+ V K+ + ++VK+ K P V++K+L LI W +
Sbjct: 54 VQLLALTLLETIITNCGELIHMQVAEKDILHKMVKM--AKRKPNIQVKEKILILIDTWQE 111
Query: 443 AFQN-QAELQGVGQVYNELRTKGLNF 517
+F Q Y EL G+ F
Sbjct: 112 SFSGPQGRHPQYYAAYQELLRAGIVF 137
Score = 45.6 bits (103), Expect = 3e-05
Identities = 17/48 (35%), Positives = 30/48 (62%)
Frame = +3
Query: 111 IEQATDGALPSENWALNMEICDIINSSTDGPKDAIKAIRKRLTTSAGK 254
+++AT L +WA+N+EICD++N ++ + I+KRLT+ K
Sbjct: 6 VDRATSDMLIGPDWAMNLEICDMLNHEPGQTREVVSGIKKRLTSRTSK 53
>At4g32760.1 68417.m04661 VHS domain-containing protein / GAT
domain-containing protein weak similarity to hepatocyte
growth factor-regulated tyrosine kinase substrate HRS
isoform 2 [Homo sapiens] GI:9022389; contains Pfam
profiles PF00790: VHS domain, PF03127: GAT domain
Length = 838
Score = 48.8 bits (111), Expect = 3e-06
Identities = 24/55 (43%), Positives = 34/55 (61%)
Frame = +2
Query: 284 VLETCVKNCGKPFHVLVCNKEFISELVKLIGPKNDPPTVVQDKVLSLIQCWADAF 448
+LET VKNCG H+ V K I E+V+++ K P V++K+L LI W +AF
Sbjct: 77 LLETIVKNCGDMVHMHVAEKGVIHEMVRIV--KKKPDFHVKEKILVLIDTWQEAF 129
Score = 36.3 bits (80), Expect = 0.018
Identities = 14/30 (46%), Positives = 21/30 (70%)
Frame = +3
Query: 99 VGQKIEQATDGALPSENWALNMEICDIINS 188
V +E+AT L +WA+N+EICD++NS
Sbjct: 2 VNAMVERATSEMLIGPDWAMNLEICDMLNS 31
>At5g63640.1 68418.m07990 VHS domain-containing protein / GAT
domain-containing protein weak similarity to hepatocyte
growth factor-regulated tyrosine kinase substrate HRS
isoform 2 [Homo sapiens] GI:9022389; contains Pfam
profiles PF00790: VHS domain, PF03127: GAT domain
Length = 447
Score = 39.1 bits (87), Expect = 0.003
Identities = 18/42 (42%), Positives = 24/42 (57%)
Frame = +3
Query: 111 IEQATDGALPSENWALNMEICDIINSSTDGPKDAIKAIRKRL 236
+ AT L +WA N+EIC++ KD IKAI+KRL
Sbjct: 6 VSSATSEKLADVDWAKNIEICELAARDERQAKDVIKAIKKRL 47
Score = 31.1 bits (67), Expect = 0.69
Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 2/92 (2%)
Frame = +2
Query: 269 MYTLTVLETCVKNCGKPFHVLVCNKEFISELVKLIGPKNDPPTVVQDKVLSLIQCWADAF 448
+Y + +LE + N G+ H V + + LVK++ K+D P V++++ L+ +
Sbjct: 56 LYAVQLLEMLMNNIGENIHKQVIDTGVLPTLVKIVKKKSDLP--VRERIFLLLDATQTSL 113
Query: 449 QN-QAELQGVGQVYNELRTKGLNF-R*PT*TP 538
+ Y EL G+ F + P TP
Sbjct: 114 GGASGKFPQYYTAYYELVNAGVKFTQRPNATP 145
>At1g06210.2 68414.m00653 VHS domain-containing protein / GAT
domain-containing protein weak similarity to SP|Q9UJY5
ADP-ribosylation factor binding protein GGA1 {Homo
sapiens}; contains Pfam profiles PF00790: VHS domain,
PF03127: GAT domain
Length = 279
Score = 35.1 bits (77), Expect = 0.043
Identities = 13/43 (30%), Positives = 26/43 (60%)
Frame = +3
Query: 111 IEQATDGALPSENWALNMEICDIINSSTDGPKDAIKAIRKRLT 239
+++AT L NW +NM IC IN+ + ++AI+++++
Sbjct: 42 VDEATLETLEEPNWGMNMRICAQINNDEFNGTEIVRAIKRKIS 84
Score = 30.3 bits (65), Expect = 1.2
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Frame = +2
Query: 275 TLTVLETCVKNCGKPFHVLVCNKEFISELVKLIGPKNDPPTVVQDKVLSLIQCWADAFQN 454
+L +LE C NC K F V +++ + E+V LI + + + + LI+ W + Q+
Sbjct: 94 SLELLEACAMNCEKVFSE-VASEKVLDEMVWLI-KNGEADSENRKRAFQLIRAWGQS-QD 150
Query: 455 QAELQGVGQVYNELR-TKGLNFR 520
L Q Y L GL+ R
Sbjct: 151 LTYLPVFHQTYMSLEGENGLHAR 173
>At1g06210.1 68414.m00654 VHS domain-containing protein / GAT
domain-containing protein weak similarity to SP|Q9UJY5
ADP-ribosylation factor binding protein GGA1 {Homo
sapiens}; contains Pfam profiles PF00790: VHS domain,
PF03127: GAT domain
Length = 383
Score = 35.1 bits (77), Expect = 0.043
Identities = 13/43 (30%), Positives = 26/43 (60%)
Frame = +3
Query: 111 IEQATDGALPSENWALNMEICDIINSSTDGPKDAIKAIRKRLT 239
+++AT L NW +NM IC IN+ + ++AI+++++
Sbjct: 42 VDEATLETLEEPNWGMNMRICAQINNDEFNGTEIVRAIKRKIS 84
Score = 30.3 bits (65), Expect = 1.2
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Frame = +2
Query: 275 TLTVLETCVKNCGKPFHVLVCNKEFISELVKLIGPKNDPPTVVQDKVLSLIQCWADAFQN 454
+L +LE C NC K F V +++ + E+V LI + + + + LI+ W + Q+
Sbjct: 94 SLELLEACAMNCEKVFSE-VASEKVLDEMVWLI-KNGEADSENRKRAFQLIRAWGQS-QD 150
Query: 455 QAELQGVGQVYNELR-TKGLNFR 520
L Q Y L GL+ R
Sbjct: 151 LTYLPVFHQTYMSLEGENGLHAR 173
>At5g20560.1 68418.m02441 beta-1,3-glucanase, putative similar to
plant beta-1,3-glucanase genes bg4 GI:2808438 from
[Arabidopsis thaliana]
Length = 337
Score = 29.1 bits (62), Expect = 2.8
Identities = 12/24 (50%), Positives = 19/24 (79%)
Frame = -2
Query: 627 RVLRQDGALRGTNLFNAIRDTPLW 556
+++ +DGAL+ +NLF+AI D LW
Sbjct: 229 QIVVKDGALKYSNLFDAIFDAFLW 252
>At5g20320.1 68418.m02418 DEAD/DEAH box helicase, putative similar to
CAF protein [Arabidopsis thaliana] GI:6102610; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain, PF03368: Domain of
unknown function, PF00636: RNase3 domain, PF00035:
Double-stranded RNA binding motif
Length = 1676
Score = 28.7 bits (61), Expect = 3.7
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +2
Query: 290 ETCVKNCGKPFHVLVCNKE 346
ETCV NC KP H C +E
Sbjct: 1602 ETCVANCWKPPHFECCEEE 1620
>At5g09670.2 68418.m01119 loricrin-related contains weak similarity
to Loricrin (Swiss-Prot:P23490) [Homo sapiens]
Length = 546
Score = 28.7 bits (61), Expect = 3.7
Identities = 16/43 (37%), Positives = 19/43 (44%)
Frame = -3
Query: 620 CGKTER*GEPTCSTPSGTLRCGVKIGAMASKSVIGNSNLWCEA 492
C K P C G RC G + SKSV G +N +C A
Sbjct: 313 CSKGAEGSTPLCKAHGGGKRCLADGGGICSKSVHGGTN-FCVA 354
>At5g09670.1 68418.m01118 loricrin-related contains weak similarity
to Loricrin (Swiss-Prot:P23490) [Homo sapiens]
Length = 546
Score = 28.7 bits (61), Expect = 3.7
Identities = 16/43 (37%), Positives = 19/43 (44%)
Frame = -3
Query: 620 CGKTER*GEPTCSTPSGTLRCGVKIGAMASKSVIGNSNLWCEA 492
C K P C G RC G + SKSV G +N +C A
Sbjct: 313 CSKGAEGSTPLCKAHGGGKRCLADGGGICSKSVHGGTN-FCVA 354
>At3g11325.1 68416.m01377 hypothetical protein
Length = 401
Score = 28.7 bits (61), Expect = 3.7
Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 6/72 (8%)
Frame = -3
Query: 263 LCSLPSACSQPFSYCFNGIFRSVRTAV------YYIAYFHVQSPIFGW*CAICGLFNFLT 102
+C S C QPF F+ +F + + Y + +FH + + GW C + +F F+
Sbjct: 260 ICPEGSTCRQPFLLRFSALFAELTDMIVPVAVNYRVGFFHANT-VRGWNC-MDMIFFFMN 317
Query: 101 HRRRKGIPYTKK 66
R + + K
Sbjct: 318 PRPGYEVTFLNK 329
>At5g55030.2 68418.m06856 expressed protein
Length = 639
Score = 28.3 bits (60), Expect = 4.9
Identities = 23/82 (28%), Positives = 32/82 (39%)
Frame = -3
Query: 398 PSADHFWGQSILPTLI*IPYCRREHGTAFHSFLRMFPGQSACTSPLCSLPSACSQPFSYC 219
PS +HF Q+ P R T FH FP Q+ P+ + + QPF
Sbjct: 511 PSREHFHQQAFKP--------RDAEETQFHPQRNGFPFQTFVHQPVHGMMNGGYQPFQNN 562
Query: 218 FNGIFRSVRTAVYYIAYFHVQS 153
+F + + FHVQS
Sbjct: 563 RPIVFPQMAAPTSDFSRFHVQS 584
>At5g55030.1 68418.m06855 expressed protein
Length = 639
Score = 28.3 bits (60), Expect = 4.9
Identities = 23/82 (28%), Positives = 32/82 (39%)
Frame = -3
Query: 398 PSADHFWGQSILPTLI*IPYCRREHGTAFHSFLRMFPGQSACTSPLCSLPSACSQPFSYC 219
PS +HF Q+ P R T FH FP Q+ P+ + + QPF
Sbjct: 511 PSREHFHQQAFKP--------RDAEETQFHPQRNGFPFQTFVHQPVHGMMNGGYQPFQNN 562
Query: 218 FNGIFRSVRTAVYYIAYFHVQS 153
+F + + FHVQS
Sbjct: 563 RPIVFPQMAAPTSDFSRFHVQS 584
>At5g17960.1 68418.m02106 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 599
Score = 28.3 bits (60), Expect = 4.9
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -1
Query: 313 STVFYACFQDSQRVHHHCVVFPALV 239
S YACFQ + VH +CV P ++
Sbjct: 200 SEASYACFQCNYVVHQYCVDLPRVI 224
>At3g62270.1 68416.m06996 anion exchange family protein contains
similarity to anion exchanger 3, cardiac splice form -
Rattus norvegicus, PIR:A42497
Length = 703
Score = 28.3 bits (60), Expect = 4.9
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +3
Query: 54 TKMSFFGVGNPFSTPVGQKIEQATDGALPSENWALNMEICDIINSSTDG 200
T FF P + G+++E++TDG L + + IC II+S G
Sbjct: 40 TTYIFFASAIPVIS-FGEQLERSTDGVLTAVQTLASTAICGIIHSIIGG 87
>At3g02890.1 68416.m00284 PHD finger protein-related contains low
similarity to PHD-finger domain proteins
Length = 963
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/21 (66%), Positives = 18/21 (85%), Gaps = 1/21 (4%)
Frame = +1
Query: 586 QVGSPQRSVLPQNSS-SRTTS 645
Q+GSP+RSVLP+ S+ SR TS
Sbjct: 300 QIGSPKRSVLPRMSTLSRETS 320
>At5g39970.1 68418.m04847 expressed protein low similarity to
up-regulated by thyroid hormone in tadpoles; expressed
specifically in the tail and only at metamorphosis;
membrane bound or extracellular protein; C-terminal
basic region [Xenopus laevis] GI:1234787
Length = 690
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Frame = -3
Query: 314 FHSFLRMFPGQSACTSPLC---SLPSACSQPFSYC-FNG 210
F SFL +F + + + PLC + P QP +C FNG
Sbjct: 10 FLSFLLLFLAKKSLSHPLCNDLTAPFNLKQPLGFCQFNG 48
>At2g02700.1 68415.m00210 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 499
Score = 27.9 bits (59), Expect = 6.5
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = -1
Query: 328 NMERLSTVFYACFQDSQRVHHHCVVFP 248
N ++ T +Y C + QR H CV P
Sbjct: 134 NTRKVGTCYYFCVECDQRYHKECVESP 160
>At1g35610.1 68414.m04421 DC1 domain-containing protein contains
Pfam protein PF03107 DC1 domain
Length = 612
Score = 27.9 bits (59), Expect = 6.5
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -1
Query: 301 YACFQDSQRVHHHCVVFPALV 239
YACFQ + VH +C+ P ++
Sbjct: 199 YACFQCNYMVHQNCIDLPRVI 219
>At5g40030.1 68418.m04854 protein kinase, putative similar to stpk1
protein kinase [Solanum tuberosum]
gi|1200256|emb|CAA62476
Length = 499
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = -3
Query: 284 QSACTSPLCSLPSACSQPFSYCFNGIF 204
Q C P C LP AC QP CF F
Sbjct: 287 QPPCIDPSCKLPVACIQP--SCFKPRF 311
>At3g13760.1 68416.m01736 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 652
Score = 27.5 bits (58), Expect = 8.5
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = -1
Query: 301 YACFQDSQRVHHHCVVFPALV 239
YACFQ + +H +C+ P ++
Sbjct: 239 YACFQCNYMIHQNCIDLPRVI 259
>At3g11660.1 68416.m01429 harpin-induced family protein / HIN1
family protein / harpin-responsive family protein
similar to harpin-induced protein hin1 (GI:1619321)
[Nicotiana tabacum]
Length = 209
Score = 27.5 bits (58), Expect = 8.5
Identities = 21/84 (25%), Positives = 39/84 (46%)
Frame = -1
Query: 259 VVFPALVVNLFLIALMASLGPSVLLFIISHISMFRAQFSDGNAPSVACSIF*PTGVEKGF 80
++F ++ L ++ + A L PS FI+ +++ S GN P++ S F T +
Sbjct: 22 IIFVLFIIFLTILLIWAILQPSKPRFILQDATVYAFNVS-GNPPNLLTSNFQIT-LSSRN 79
Query: 79 PTPKNDIFVK**NIYLLMRFTNLT 8
P K I+ ++Y R +T
Sbjct: 80 PNNKIGIYYDRLDVYATYRSQQIT 103
>At2g21235.1 68415.m02522 bZIP protein-related similar to
VirE2-interacting protein VIP1 [Arabidopsis thaliana]
GI:7258340, tbZIP transcription factor [Arabidopsis
thaliana] GI:17065884
Length = 550
Score = 27.5 bits (58), Expect = 8.5
Identities = 20/61 (32%), Positives = 27/61 (44%)
Frame = +1
Query: 445 LPEPS*ITGSRSSVQRASHQRFEFPMTDLDAMAPIFTPQRSVPDGVEQVGSPQRSVLPQN 624
+P PS S++SV AS F FP T + + TP PD + S+ PQ
Sbjct: 94 IPTPSSSHNSKASVSSASSSSFYFPQTSPSSCS---TPSSFSPDSFSHSNTGPWSI-PQP 149
Query: 625 S 627
S
Sbjct: 150 S 150
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,652,515
Number of Sequences: 28952
Number of extensions: 391115
Number of successful extensions: 1104
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 1040
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1099
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1412971776
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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