Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060277.seq
         (678 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz...    29   0.62 
SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1 |Schizosacch...    27   2.5  
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    26   4.4  
SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c...    25   7.6  
SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein |Sch...    25   7.6  

>SPBC56F2.07c |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 29.1 bits (62), Expect = 0.62
 Identities = 19/47 (40%), Positives = 24/47 (51%)
 Frame = +3

Query: 429 RIRSVEIVFEDEMSTCTDTGLLDRSVDSSSRTVAMILLNAPDGIEPL 569
           R  S  ++F DE+   T     +R  D+SS  V   LLN  DGIE L
Sbjct: 638 RQASPSVIFFDEIDALT----ANRGEDNSSDRVVAALLNELDGIEAL 680


>SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 12/18 (66%), Positives = 13/18 (72%)
 Frame = +2

Query: 257 SRRQTNRVRTLHFRPPQL 310
           S   TNRV TL FRPP+L
Sbjct: 429 SANYTNRVITLWFRPPEL 446


>SPBC3F6.05 |rga1||GTPase activating protein
           Rga1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1150

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 156 WHNHTIRIVATLGITRAYHVAHDRPHRDPLYV 251
           W+N T +I   L  T + +V++D PH    YV
Sbjct: 527 WNNQTKQIECYLCYTESSNVSNDEPHPSFEYV 558


>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 479

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +1

Query: 346 TLP*TSAITKKKWPPKGPRY 405
           T+P   ++ ++KW PK P++
Sbjct: 28  TIPVVPSVPERKWDPKAPKH 47


>SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 459

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = -2

Query: 185 CDDSYCMVVPRSTQPSSCNFVRNLNT--LYSSSVCFTMSI 72
           C + YC+   ++   S CN V NL T  L S S C  + I
Sbjct: 371 CPEGYCIWYLKTLNDSPCNEVFNLATKKLCSFSGCDDLEI 410


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,403,244
Number of Sequences: 5004
Number of extensions: 44036
Number of successful extensions: 134
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)