Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060277.seq
         (678 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0993 - 23182070-23182615                                         31   1.1  
07_01_0205 + 1481380-1481892                                           29   2.6  
09_04_0583 - 18699265-18699459,18701579-18701827,18703283-187036...    29   3.4  
11_02_0150 - 8816714-8817806,8817993-8818126                           29   4.5  
09_06_0260 - 21911358-21911438,21911715-21911828,21911911-219120...    29   4.5  
09_03_0048 + 11880848-11880952,11881030-11881312,11882667-118827...    29   4.5  
07_03_0708 - 20865786-20867153                                         28   7.9  

>07_03_0993 - 23182070-23182615
          Length = 181

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +3

Query: 60  AARSNRHGEADR-RRIQSVQVPHEVAGGGLRRSWHNHTIRIVATLGITRA 206
           A  S   G+AD    ++ V V  E  GGG    W  H + ++ ++G+T A
Sbjct: 73  ANASEGSGDADNDEEVEMVLVEDEQGGGG-DHRWQQHVVGVLCSVGLTAA 121


>07_01_0205 + 1481380-1481892
          Length = 170

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = -1

Query: 312 HSCGGLKCKVRTRLVWRR 259
           +SCGG +C+  T++VWRR
Sbjct: 116 NSCGGRECRHYTQVVWRR 133


>09_04_0583 -
           18699265-18699459,18701579-18701827,18703283-18703669,
           18703793-18703870,18704082-18704141,18704299-18704343,
           18704506-18704718,18704867-18704932
          Length = 430

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = +3

Query: 99  RIQSVQVPHEVAGGGLRRSWHNHTIRIVATLGITRAYHVAHDRPHRDP 242
           R+Q V    ++A   L  S + H +R +++L +TR  H  HD  H+ P
Sbjct: 377 RLQQVLTTRQMARSLLAVSDYFHRLRTLSSLWVTRPRHPPHD--HQPP 422


>11_02_0150 - 8816714-8817806,8817993-8818126
          Length = 408

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = +3

Query: 198 TRAYHVAHDRPHRDPLYVQTHGAKLTECAPCTSDLRSYEIDYDDVSES 341
           T AYH   D P  +    + H   L++C PC S    +E D DD  +S
Sbjct: 70  TDAYHGDPDNPRTE---ARQHVHMLSKCLPCYSCPLVHENDADDAVKS 114


>09_06_0260 -
           21911358-21911438,21911715-21911828,21911911-21912033,
           21912342-21912419,21912498-21912647,21913505-21913601,
           21913679-21913860,21913899-21913982,21914243-21914303,
           21914414-21914506,21914588-21914782,21914937-21915006,
           21915536-21915572,21915654-21915737,21915828-21915885,
           21916008-21916084,21916185-21916244,21916325-21916687
          Length = 668

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
 Frame = +3

Query: 363 GYHKKEMAAKRTEISPAKMPLM---RIRSVEIVFEDEMSTCTDTGLLDRSVDSSSR 521
           G+ ++ +A K T +      L    R R ++ ++EDE++   +TG L   + + SR
Sbjct: 534 GFLQERLALKETGVELGHAVLFFGCRNRKMDFIYEDELNNFVETGALSELIVAFSR 589


>09_03_0048 +
           11880848-11880952,11881030-11881312,11882667-11882770,
           11883998-11884416,11884698-11884998,11885136-11885232,
           11885719-11885864,11885975-11886103
          Length = 527

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 6   EEDTERPARSQNLHRYKEAARSNRHGEADRRRI 104
           EE  +RPA   +L  ++   +  RHGEA   R+
Sbjct: 205 EETPKRPAEDADLQYWRYDVKKQRHGEAGGNRL 237


>07_03_0708 - 20865786-20867153
          Length = 455

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -2

Query: 185 CDDSYCMVVPRSTQPSSCN 129
           C+ S+C  +P S++P +CN
Sbjct: 148 CNGSFCQYLPTSSRPRTCN 166


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,068,216
Number of Sequences: 37544
Number of extensions: 348975
Number of successful extensions: 1182
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1182
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)