Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060277.seq
(678 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_11522| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.16
SB_29818| Best HMM Match : zf-AD (HMM E-Value=1.3) 32 0.49
SB_43060| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.65
SB_24046| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_16099| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_11627| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=2.6) 29 3.5
SB_37973| Best HMM Match : ABC_tran (HMM E-Value=0) 29 4.6
SB_28180| Best HMM Match : Ank (HMM E-Value=1.5e-15) 28 8.0
SB_19650| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-05) 28 8.0
SB_15367| Best HMM Match : DUF1212 (HMM E-Value=0.98) 28 8.0
SB_1025| Best HMM Match : Antistasin (HMM E-Value=3.5) 28 8.0
>SB_11522| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 277
Score = 33.5 bits (73), Expect = 0.16
Identities = 21/59 (35%), Positives = 32/59 (54%)
Frame = -3
Query: 643 RXMSRPXTSRRQALSVTESQSFSXGRGSIPSGAFSRIIATVRDDESTLRSKSPVSVQVD 467
+ + R RR LSVT+ S S R S SGA ++ + + E +LR K+ + VQ+D
Sbjct: 78 KVLVRRCLPRRWRLSVTQRSSISRHRLSSASGAVTQKNLSGAEHEGSLRMKTELLVQMD 136
>SB_29818| Best HMM Match : zf-AD (HMM E-Value=1.3)
Length = 275
Score = 31.9 bits (69), Expect = 0.49
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = +1
Query: 406 RPPKCHSCESEASRSYLKTKCRL 474
+P KC C+S R+YLKTKCR+
Sbjct: 48 KPHKCDECDSH--RNYLKTKCRV 68
>SB_43060| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 669
Score = 31.5 bits (68), Expect = 0.65
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Frame = -3
Query: 622 TSRRQALSVTESQSFSXGRGSIPSGAFSRIIATVR-DDESTLRSKSPVSVQVDISSSNTI 446
+ R E GRGS+ +GAF++ + + R ++ T S+S VS + D +
Sbjct: 492 SGERTRQKAAEDTCMVDGRGSVANGAFTKPVMSNRVQEQKTRESESHVSRENDTPVTRKS 551
Query: 445 STLRIRMSGILAGD 404
T +GI G+
Sbjct: 552 DTSLAGKNGISVGE 565
>SB_24046| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2848
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/55 (23%), Positives = 25/55 (45%)
Frame = +3
Query: 114 QVPHEVAGGGLRRSWHNHTIRIVATLGITRAYHVAHDRPHRDPLYVQTHGAKLTE 278
++P G +++ +T+ +V T +YH + R HR P ++ G E
Sbjct: 338 KIPSLFYTSGSKKTTPTYTVTVVPDFNPTSSYHSYNSRKHRLPFFMDDFGPIFAE 392
>SB_16099| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 67
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +3
Query: 9 EDTERPARSQNLHRYKEAARSNRHGEADR 95
EDTE P +SQN EA S R G A +
Sbjct: 30 EDTESPDKSQNTSGKPEATASRRSGRATK 58
>SB_11627| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=2.6)
Length = 496
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/51 (33%), Positives = 22/51 (43%)
Frame = +1
Query: 343 PTLP*TSAITKKKWPPKGPRYRPPKCHSCESEASRSYLKTKCRLAPTPGSW 495
PTLP + ++PP PRY PP H R Y + R P P +
Sbjct: 286 PTLPPRYPPSPPRYPPSPPRY-PPSLHRYPQSPLR-YPPSPIRYPPLPSRY 334
>SB_37973| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 3369
Score = 28.7 bits (61), Expect = 4.6
Identities = 17/63 (26%), Positives = 30/63 (47%)
Frame = +3
Query: 363 GYHKKEMAAKRTEISPAKMPLMRIRSVEIVFEDEMSTCTDTGLLDRSVDSSSRTVAMILL 542
G K+ + + P+ R + +I F D +S CT GL +++ SS + ++
Sbjct: 1618 GLFKQAIGISSSATGQPGYPVQRPGNRDIQFSDRVSRCTLDGLFKQAIGISS-SATRLVD 1676
Query: 543 NAP 551
NAP
Sbjct: 1677 NAP 1679
>SB_28180| Best HMM Match : Ank (HMM E-Value=1.5e-15)
Length = 211
Score = 27.9 bits (59), Expect = 8.0
Identities = 26/119 (21%), Positives = 46/119 (38%), Gaps = 4/119 (3%)
Frame = +3
Query: 210 HVAHDRPHRDPLYVQTH-GAKLTECAPCTSDLRSYEIDYDDVSESTDSPLDIGYHKKEMA 386
H A D Y H AK + LR +D ES+++PL + +
Sbjct: 5 HGARIDARNDEDYTPLHLAAKYGRARTAEALLRRDSDIVNDEDESSNTPLHLAAIEGNTT 64
Query: 387 AKRTEISPAKMPLMRI---RSVEIVFEDEMSTCTDTGLLDRSVDSSSRTVAMILLNAPD 554
+ ++ + R+ I+ D T LD ++D + VAM ++N+P+
Sbjct: 65 PLHLASRSGHVDMVELLLNRNANIILTDH----TGRNCLDMAIDDGRKDVAMAIINSPN 119
>SB_19650| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-05)
Length = 300
Score = 27.9 bits (59), Expect = 8.0
Identities = 16/38 (42%), Positives = 25/38 (65%)
Frame = +1
Query: 19 SDLRGAKIFIGIKKLLALIDMVKQTDEEYRVFKFLTKL 132
SDL G+ IG+ LLAL+ V + D + +++KF+T L
Sbjct: 84 SDLLGS--IIGLPVLLALLFDVARNDWDCKLYKFITFL 119
>SB_15367| Best HMM Match : DUF1212 (HMM E-Value=0.98)
Length = 286
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = +3
Query: 210 HVAHDRPHRDPLYVQTHGAKLTECAPCTSDLRSYEIDYDDVSES 341
H AH R + +TECA L+S +Y D++E+
Sbjct: 50 HAAHSMATRSATQTTAETSFITECAATILGLQSLREEYPDLNEN 93
>SB_1025| Best HMM Match : Antistasin (HMM E-Value=3.5)
Length = 136
Score = 27.9 bits (59), Expect = 8.0
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +3
Query: 75 RHGEADRRRIQSVQVPHEVAGGGLRRSWHNHTIRIV 182
R G DR + S Q E A L++SWH T+R V
Sbjct: 20 RDGNGDRIPVNSCQ---EEANKNLKKSWHPQTLRNV 52
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,458,432
Number of Sequences: 59808
Number of extensions: 376525
Number of successful extensions: 1281
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1281
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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