Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060277.seq
(678 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z96100-7|CAB09531.1| 824|Caenorhabditis elegans Hypothetical pr... 29 2.3
Z79698-2|CAB01976.1| 824|Caenorhabditis elegans Hypothetical pr... 29 2.3
Z79698-1|CAL44963.1| 758|Caenorhabditis elegans Hypothetical pr... 29 2.3
AL021481-8|CAM33497.2| 127|Caenorhabditis elegans Hypothetical ... 29 3.0
Z83107-1|CAB05506.2| 461|Caenorhabditis elegans Hypothetical pr... 28 5.3
Z34533-1|CAA84302.3| 730|Caenorhabditis elegans Hypothetical pr... 28 5.3
AF125442-11|AAD12791.1| 624|Caenorhabditis elegans Hypothetical... 28 7.0
Z35640-6|CAA84702.2| 1226|Caenorhabditis elegans Hypothetical pr... 27 9.3
Z35639-9|CAA84700.2| 1226|Caenorhabditis elegans Hypothetical pr... 27 9.3
U53141-1|AAA96103.1| 322|Caenorhabditis elegans Serpentine rece... 27 9.3
>Z96100-7|CAB09531.1| 824|Caenorhabditis elegans Hypothetical
protein H15N14.2a protein.
Length = 824
Score = 29.5 bits (63), Expect = 2.3
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +1
Query: 7 RKIQSDLRGAKIF-IGIKKLLALIDMVKQTDEEYRVFKFLTKLQ 135
+K+ S RG +GIK LL LI+ +Q + +YRV L ++
Sbjct: 773 QKLASICRGEGFHGVGIKHLLELIESARQCEADYRVPTLLNMME 816
>Z79698-2|CAB01976.1| 824|Caenorhabditis elegans Hypothetical
protein H15N14.2a protein.
Length = 824
Score = 29.5 bits (63), Expect = 2.3
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +1
Query: 7 RKIQSDLRGAKIF-IGIKKLLALIDMVKQTDEEYRVFKFLTKLQ 135
+K+ S RG +GIK LL LI+ +Q + +YRV L ++
Sbjct: 773 QKLASICRGEGFHGVGIKHLLELIESARQCEADYRVPTLLNMME 816
>Z79698-1|CAL44963.1| 758|Caenorhabditis elegans Hypothetical
protein H15N14.2b protein.
Length = 758
Score = 29.5 bits (63), Expect = 2.3
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +1
Query: 7 RKIQSDLRGAKIF-IGIKKLLALIDMVKQTDEEYRVFKFLTKLQ 135
+K+ S RG +GIK LL LI+ +Q + +YRV L ++
Sbjct: 707 QKLASICRGEGFHGVGIKHLLELIESARQCEADYRVPTLLNMME 750
>AL021481-8|CAM33497.2| 127|Caenorhabditis elegans Hypothetical
protein Y43F4B.9 protein.
Length = 127
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +3
Query: 456 EDEMSTCTDTGLLDRSVDSSSRTVAMILLNAPDGIE 563
ED C T LLD S D+ S ++ ++ ++ DG++
Sbjct: 21 EDTSRACVSTYLLDTSSDTRSGSLCILKIDEADGLQ 56
>Z83107-1|CAB05506.2| 461|Caenorhabditis elegans Hypothetical
protein F32A7.3a protein.
Length = 461
Score = 28.3 bits (60), Expect = 5.3
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 551 GRYRASTX*ERLRLCDAQRLTATCXRTTHXS 643
G R S R++ CD +R+T +C R T S
Sbjct: 42 GILRESLRSNRVQACDGERITLSCPRNTQIS 72
>Z34533-1|CAA84302.3| 730|Caenorhabditis elegans Hypothetical
protein B0285.1 protein.
Length = 730
Score = 28.3 bits (60), Expect = 5.3
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = +2
Query: 254 DSRRQTNRVRTLHFRPPQL 310
+SR TNRV TL +RPP+L
Sbjct: 472 ESRLYTNRVITLWYRPPEL 490
>AF125442-11|AAD12791.1| 624|Caenorhabditis elegans Hypothetical
protein H04M03.1 protein.
Length = 624
Score = 27.9 bits (59), Expect = 7.0
Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
Frame = +3
Query: 300 LRSYEIDYDDVSESTDSPLDI--GYHKKEMAAKRTEISPAKMPLMRIRSVEIVFEDEMST 473
L+ +I YDDVS T LD G +A RT S + + +R +M
Sbjct: 107 LKMADIGYDDVSVVTKDRLDADPGISLSNASASRTSSSGSGEGIENVRLSSHYMSQKMFD 166
Query: 474 CTDTGLLDRSVDSSSRTVAMI 536
T L D S+ S RT+ ++
Sbjct: 167 FNKTKLFDCSM--SGRTMYVV 185
>Z35640-6|CAA84702.2| 1226|Caenorhabditis elegans Hypothetical
protein F43D9.1 protein.
Length = 1226
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/53 (24%), Positives = 25/53 (47%)
Frame = +3
Query: 15 TERPARSQNLHRYKEAARSNRHGEADRRRIQSVQVPHEVAGGGLRRSWHNHTI 173
T P R L R ++ + E +RR ++ +V + +++ HNHT+
Sbjct: 71 TREPTRVSTLKREEKEKKQKERMERERRELEEKRVQED----EMKKEEHNHTV 119
>Z35639-9|CAA84700.2| 1226|Caenorhabditis elegans Hypothetical
protein F43D9.1 protein.
Length = 1226
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/53 (24%), Positives = 25/53 (47%)
Frame = +3
Query: 15 TERPARSQNLHRYKEAARSNRHGEADRRRIQSVQVPHEVAGGGLRRSWHNHTI 173
T P R L R ++ + E +RR ++ +V + +++ HNHT+
Sbjct: 71 TREPTRVSTLKREEKEKKQKERMERERRELEEKRVQED----EMKKEEHNHTV 119
>U53141-1|AAA96103.1| 322|Caenorhabditis elegans Serpentine
receptor, class x protein117 protein.
Length = 322
Score = 27.5 bits (58), Expect = 9.3
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Frame = -2
Query: 143 PSSCNFVRNLNT---LYSSSVCFTMSIRASSFFIPMKILAPRRSLCIFLV 3
P C+++ NL L S+C SIR S F + M I+ S+C FL+
Sbjct: 155 PEGCHYLYNLKDIGWLPEQSLC--TSIRRSIFIVSMIIIVIVTSVCGFLL 202
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,852,119
Number of Sequences: 27780
Number of extensions: 269632
Number of successful extensions: 1018
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 956
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1018
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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