Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060277.seq
         (678 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g78240.1 68414.m09118 dehydration-responsive protein-related ...    29   2.1  
At5g47820.2 68418.m05908 kinesin-like protein (FRA1) identical t...    29   2.8  
At5g47820.1 68418.m05907 kinesin-like protein (FRA1) identical t...    29   2.8  
At2g40475.1 68415.m04995 expressed protein                             28   4.9  
At5g55300.1 68418.m06891 DNA topoisomerase I identical to Swiss-...    28   6.5  
At1g12210.1 68414.m01413 disease resistance protein (CC-NBS-LRR ...    27   8.6  

>At1g78240.1 68414.m09118 dehydration-responsive protein-related
           similar to early-responsive to dehydration stress ERD3
           protein [Arabidopsis thaliana] GI:15320410; contains
           Pfam profile PF03141: Putative methyltransferase
          Length = 684

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 13/57 (22%), Positives = 29/57 (50%)
 Frame = -3

Query: 559 IPSGAFSRIIATVRDDESTLRSKSPVSVQVDISSSNTISTLRIRMSGILAGDISVLL 389
           + SG+ ++ +  + DD+ + RS SP+S +V+  S      + I+    +   +  +L
Sbjct: 222 VSSGSITKRMMMMEDDQISFRSASPMSDEVEDYSHQIAEMIGIKKDNFIEAGVRTIL 278


>At5g47820.2 68418.m05908 kinesin-like protein (FRA1) identical to
           kinesin-like protein [Arabidopsis thaliana] GI:27260890;
           contains Pfam profile PF00225: Kinesin motor domain
          Length = 1035

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 14/51 (27%), Positives = 23/51 (45%)
 Frame = +3

Query: 12  DTERPARSQNLHRYKEAARSNRHGEADRRRIQSVQVPHEVAGGGLRRSWHN 164
           +T      + LH Y+       H E D + I++  +   V   GL+RS H+
Sbjct: 422 ETANEELCRELHEYRSRCPGVEHSEKDFKDIRADDIVGSVRPDGLKRSLHS 472


>At5g47820.1 68418.m05907 kinesin-like protein (FRA1) identical to
           kinesin-like protein [Arabidopsis thaliana] GI:27260890;
           contains Pfam profile PF00225: Kinesin motor domain
          Length = 1035

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 14/51 (27%), Positives = 23/51 (45%)
 Frame = +3

Query: 12  DTERPARSQNLHRYKEAARSNRHGEADRRRIQSVQVPHEVAGGGLRRSWHN 164
           +T      + LH Y+       H E D + I++  +   V   GL+RS H+
Sbjct: 422 ETANEELCRELHEYRSRCPGVEHSEKDFKDIRADDIVGSVRPDGLKRSLHS 472


>At2g40475.1 68415.m04995 expressed protein
          Length = 193

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +1

Query: 385 PPKGPRYRPPKCHSCESEASRSYLK 459
           PP    +RP KC+SC    SRSY+K
Sbjct: 124 PPSKVEHRPRKCYSC----SRSYVK 144


>At5g55300.1 68418.m06891 DNA topoisomerase I identical to
           Swiss-Prot:P30181 DNA topoisomerase I [Arabidopsis
           thaliana]
          Length = 916

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 23/78 (29%), Positives = 32/78 (41%)
 Frame = -3

Query: 676 DFQVXRGLXSXRXMSRPXTSRRQALSVTESQSFSXGRGSIPSGAFSRIIATVRDDESTLR 497
           D +  R L S    ++  TS RQ   V+  Q      G  P    SRII    DDE+ + 
Sbjct: 121 DSEDDRPLSSILSGNKGPTSSRQ---VSSPQPEKKNNGDRPLDRASRIIKDESDDETPIS 177

Query: 496 SKSPVSVQVDISSSNTIS 443
           S     +   +S  N +S
Sbjct: 178 SMFRKKIDSGMSGGNQLS 195


>At1g12210.1 68414.m01413 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 885

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = +3

Query: 369 HKKEMAAKRTEISPAKMPLMRIRSVEIVFEDEMSTC 476
           +++E    R  ++  ++ L RI+++E  F D +STC
Sbjct: 58  NREEFTGHRRRLAQVQVWLTRIQTIENQFNDLLSTC 93


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,156,005
Number of Sequences: 28952
Number of extensions: 258166
Number of successful extensions: 890
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 888
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)