Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060276.seq
(685 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0992 + 25083397-25083537,25084198-25084228,25084971-250851... 50 2e-06
06_01_0579 + 4099039-4099086,4099798-4099848,4100151-4100286,410... 41 8e-04
12_02_0498 + 19721038-19721178,19721376-19721472,19721576-197216... 31 0.64
02_04_0080 - 19529575-19529643,19529756-19529938,19530061-195302... 31 0.85
02_02_0472 - 10725234-10726119,10726201-10726808 31 0.85
09_03_0096 + 12328116-12329561,12329810-12329852,12332119-123322... 31 1.1
01_01_0829 + 6471032-6471870,6472490-6472685,6472772-6472956,647... 30 1.5
06_01_0926 - 7139220-7139318,7139394-7139478,7139573-7139643,713... 30 2.0
02_05_0166 + 26412217-26413403,26413918-26414800 30 2.0
10_08_0547 - 18682357-18682683,18682971-18683060,18683279-186833... 29 2.6
02_05_0532 - 29814199-29814478,29814922-29814969,29815558-29815649 29 3.4
12_02_1012 - 25281820-25281987,25282337-25282409,25283370-252834... 29 4.5
10_08_0935 + 21670372-21671396,21672057-21672987 29 4.5
05_03_0086 + 8279518-8280320,8280923-8281844 29 4.5
04_04_0995 + 29985473-29985625,29986372-29986446,29986537-299870... 28 6.0
04_04_0611 - 26594737-26594991,26595307-26595396,26595490-265955... 28 6.0
01_01_0938 + 7400843-7401522,7402192-7403065 28 6.0
12_01_0319 + 2440129-2440661,2440875-2440902 28 7.9
11_06_0412 - 23235670-23236512,23236804-23237838 28 7.9
11_01_0314 + 2339241-2339728,2342720-2343608 28 7.9
06_02_0007 - 10533689-10534565,10535054-10535946 28 7.9
04_04_0696 + 27328043-27329259,27329887-27330757 28 7.9
03_02_0490 - 8840577-8840914,8841009-8841067,8841168-8841283,884... 28 7.9
02_05_0094 - 25758213-25758479,25758886-25758975,25759090-257591... 28 7.9
>12_02_0992 +
25083397-25083537,25084198-25084228,25084971-25085139,
25085228-25085291,25085408-25085474,25086543-25086586,
25086835-25086922,25087079-25087238,25087659-25087779,
25087859-25087942,25088043-25088162,25088689-25088901,
25088995-25089054,25089144-25089262,25089407-25089465,
25089585-25089919
Length = 624
Score = 50.0 bits (114), Expect = 2e-06
Identities = 24/92 (26%), Positives = 34/92 (36%)
Frame = +1
Query: 211 VLLCVTGEMFVRRSKKTVAGTKKMEYKTRQWHEKCFCCVVCKNPIGTKSFIPREQEIYCA 390
+L +G K + + + WH +CF C C PI F E + Y
Sbjct: 247 ILFASSGSRTCAGCKNPIGHGRFLSCMDSVWHPQCFRCFACNKPISEYEFAMHEDQPYHK 306
Query: 391 GCYEDKFATRCVKCNKIITQGRRYVQERTVAP 486
CY+D F +C C I R + E P
Sbjct: 307 SCYKDFFHPKCDVCKNFIPTNRNGLIEYRAHP 338
>06_01_0579 +
4099039-4099086,4099798-4099848,4100151-4100286,
4100287-4100401,4100496-4100528,4101037-4101166,
4101663-4101751,4102042-4102148,4102238-4102309,
4102384-4102764,4104907-4105064,4105581-4105674,
4106082-4106089,4106297-4106387,4107136-4107289,
4108257-4108377,4108468-4108551,4108946-4109065,
4109181-4109393,4109482-4109544,4109668-4109783,
4110132-4110190,4111126-4111445
Length = 920
Score = 41.1 bits (92), Expect = 8e-04
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = +1
Query: 301 WHEKCFCCVVCKNPIGTKSFIPREQEIYCAGCYEDKFATRCVKCNKII 444
WH +CF C C PI F Y CY+++F +C C + I
Sbjct: 578 WHPECFRCHACNQPIYDYEFSMSGNHPYHKTCYKERFHPKCDVCKQFI 625
>12_02_0498 +
19721038-19721178,19721376-19721472,19721576-19721619,
19722120-19722203,19722441-19722662
Length = 195
Score = 31.5 bits (68), Expect = 0.64
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = +1
Query: 256 KTVAGTKKMEYKTRQWHEKCFCCVVCKNPIGTKSFIPREQEIYCAGCYEDKF 411
KTV K+ R +H+ CF C CK + ++ E +YC ++ F
Sbjct: 17 KTVYLVDKLTADNRVYHKACFRCHHCKGTLKLANYNSFEGVLYCRPHFDQLF 68
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/44 (27%), Positives = 21/44 (47%)
Frame = +1
Query: 256 KTVAGTKKMEYKTRQWHEKCFCCVVCKNPIGTKSFIPREQEIYC 387
KTV +++ +H+ CF C I ++I E ++YC
Sbjct: 115 KTVYPIERVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKLYC 158
>02_04_0080 -
19529575-19529643,19529756-19529938,19530061-19530210,
19530297-19530379,19530497-19530599,19530709-19530918,
19531023-19531183,19531275-19531351,19531483-19531610,
19531695-19531935,19532047-19532180,19532261-19532435,
19532587-19532656,19532746-19532803,19532887-19532994,
19533088-19533283,19533381-19533727,19534008-19534034,
19534334-19534336
Length = 840
Score = 31.1 bits (67), Expect = 0.85
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = +2
Query: 185 ATAERENKKFCCALRERCLLGDPRKLLQ 268
ATA +E +FC A+RE + D RK+LQ
Sbjct: 82 ATAVKEFSEFCKAIREHLTIEDMRKILQ 109
>02_02_0472 - 10725234-10726119,10726201-10726808
Length = 497
Score = 31.1 bits (67), Expect = 0.85
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +2
Query: 110 VGQDRIRRARENNEDVAILSM-FLPNATAERENKKFCCALRERCLLGDPRKLLQE 271
V ++++ RA+ E + +L FLP + E KF C L E C G+ L Q+
Sbjct: 137 VSRNKLARAQTEREILGLLDHPFLPTLYSHFETDKFYCLLMEFCSGGNLHSLRQK 191
>09_03_0096 +
12328116-12329561,12329810-12329852,12332119-12332237,
12333326-12333853
Length = 711
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Frame = +1
Query: 322 CVVCKNPIGTKSFIPREQEIYCAGC---YEDKFATRCVKCN 435
CV+CK + ++ C GC +E+K RC CN
Sbjct: 656 CVICKREEACVILLQCAHQVLCVGCNKRHEEKGVARCPCCN 696
>01_01_0829 +
6471032-6471870,6472490-6472685,6472772-6472956,
6473206-6473539,6473629-6473833,6474927-6475033,
6475117-6475269
Length = 672
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = -3
Query: 293 VLYSIFLVPATVFLDRLTNISPVTHSKTSCFPSPQS 186
VL S P T+ RL+ +SP+THS +S P+P S
Sbjct: 21 VLMSSTDKPDTLPPGRLSPVSPLTHSSSSKLPTPSS 56
>06_01_0926 -
7139220-7139318,7139394-7139478,7139573-7139643,
7139996-7140076,7140805-7140895,7141242-7141330,
7141749-7141802,7141906-7142085,7142175-7142237,
7142575-7142705,7142807-7142900,7143343-7143684,
7143957-7144348,7145010-7148487,7149101-7149187,
7149324-7149367,7149495-7149591,7150429-7150572
Length = 1873
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/49 (26%), Positives = 23/49 (46%)
Frame = +1
Query: 256 KTVAGTKKMEYKTRQWHEKCFCCVVCKNPIGTKSFIPREQEIYCAGCYE 402
+TV +++ R +H CF C CK + ++ E +YC Y+
Sbjct: 18 RTVYPVEELAADGRVYHRPCFRCTHCKATLQFSNYSSVEGVLYCKPHYD 66
>02_05_0166 + 26412217-26413403,26413918-26414800
Length = 689
Score = 29.9 bits (64), Expect = 2.0
Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 8/80 (10%)
Frame = +2
Query: 65 LSEDLKSRLHLTMKTV------GQDRIRRARENNEDVAILSM-FLPNATAERENKKFCCA 223
LSE +R + MK + + ++ RA+ E + +L FLP E +F C
Sbjct: 309 LSELSGTRCYFAMKVMDKASLASRKKLNRAQTEREILQLLDHPFLPTLYTHFETDRFSCL 368
Query: 224 LRERCLLGDPRKLLQ-EPRR 280
+ E C GD L Q +PR+
Sbjct: 369 VMEFCPGGDLHTLRQRQPRK 388
>10_08_0547 -
18682357-18682683,18682971-18683060,18683279-18683301,
18683397-18683496,18683615-18683749
Length = 224
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = +1
Query: 301 WHEKCFCCVVCKNPIGTKSFIPREQEIYCAGCYEDKF 411
+H+ CF C CK + S+ + +YC +E F
Sbjct: 30 YHKSCFRCSHCKGTLSMCSYSSMDGVLYCKTHFEQLF 66
>02_05_0532 - 29814199-29814478,29814922-29814969,29815558-29815649
Length = 139
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
Frame = +1
Query: 253 KKTVAGTKKMEYKTRQW----HEKCFCCVVCKNPI 345
KK AGT+K E TR++ H++ C+VC N +
Sbjct: 4 KKRGAGTRKDEVVTREYTINLHKRLHGCIVCSNDL 38
>12_02_1012 -
25281820-25281987,25282337-25282409,25283370-25283420,
25283523-25283932,25284083-25284413,25285340-25285439,
25287091-25287370
Length = 470
Score = 28.7 bits (61), Expect = 4.5
Identities = 20/68 (29%), Positives = 27/68 (39%), Gaps = 2/68 (2%)
Frame = +3
Query: 435 QDNHTRAALRTRTNRGTASASRARTQHVARRPAVHFRATRSPYCGRVLRGNCFAKXC--T 608
Q R R R R A+ A ++ V + + R P C R+LR C T
Sbjct: 34 QPRRERERERRRRRRRKREAAAAASEVVMVKRELLARCMTCPLCRRILRDATTVSECLHT 93
Query: 609 SCTKPIYR 632
C K IY+
Sbjct: 94 FCRKCIYK 101
>10_08_0935 + 21670372-21671396,21672057-21672987
Length = 651
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +2
Query: 122 RIRRARENNEDVAILSM-FLPNATAERENKKFCCALRERCLLGDPRKLLQ 268
++ RA+ E + +L FLP A E +F C + E C GD L Q
Sbjct: 280 KLSRAQTEREILQLLDHPFLPTLYAHFETDRFACLVMEFCPGGDLHALRQ 329
>05_03_0086 + 8279518-8280320,8280923-8281844
Length = 574
Score = 28.7 bits (61), Expect = 4.5
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = +2
Query: 116 QDRIRRARENNEDVAILSM-FLPNATAERENKKFCCALRERCLLGDPRKLLQ-EPRRWST 289
++++ RA E + +L FLP E KF C + E C G+ L Q +P + +
Sbjct: 204 RNKMARAETEREILGLLDHPFLPTLYTHFETDKFYCLVMEYCSGGNLHSLRQKQPSKHFS 263
Query: 290 RPGS 301
P +
Sbjct: 264 EPAA 267
>04_04_0995 +
29985473-29985625,29986372-29986446,29986537-29987044,
29987349-29987734,29988418-29988641,29988728-29988893,
29989095-29989226
Length = 547
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +3
Query: 564 CGRVLRGNCFAKXCTSCTKPIYRYPGGQPA 653
C +L NC C SC KP++R P+
Sbjct: 423 CDHMLCSNCRQPFCYSCGKPLHRGHSSAPS 452
>04_04_0611 -
26594737-26594991,26595307-26595396,26595490-26595515,
26595603-26595702,26595820-26595954
Length = 201
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = +1
Query: 301 WHEKCFCCVVCKNPIGTKSFIPREQEIYCAGCYEDKF 411
+H+ CF C CK + S+ + +YC +E F
Sbjct: 30 YHKTCFKCSHCKGILSMCSYSSMDGVLYCKTHFEQLF 66
>01_01_0938 + 7400843-7401522,7402192-7403065
Length = 517
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +2
Query: 110 VGQDRIRRARENNEDVAILSM-FLPNATAERENKKFCCALRERCLLGDPRKLLQ 268
+ ++++ RA+ E + +L FLP E KF C + E C G+ L Q
Sbjct: 161 ISRNKLVRAQTEREILGLLDHPFLPTLYTHFETDKFYCLVMEYCSGGNLHSLRQ 214
>12_01_0319 + 2440129-2440661,2440875-2440902
Length = 186
Score = 27.9 bits (59), Expect = 7.9
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Frame = +2
Query: 113 GQDRIRRARENNEDV-AILSMFLPNATAERENKKFCCALRERCLLGDPRKLLQ-EPRR 280
G+++ RAR E + A+ FLP E ++ C L E C GD L Q +P R
Sbjct: 113 GRNKEGRARTEREILEAVDHPFLPRLYGVAEGDRWSCLLTEFCPGGDLHVLRQRQPHR 170
>11_06_0412 - 23235670-23236512,23236804-23237838
Length = 625
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -3
Query: 77 NLHSRRPLTFCFFFLSLDSTVVA 9
+LH+ P+ FC FLSL T++A
Sbjct: 306 SLHTSYPMVFCSGFLSLSFTILA 328
>11_01_0314 + 2339241-2339728,2342720-2343608
Length = 458
Score = 27.9 bits (59), Expect = 7.9
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Frame = +2
Query: 113 GQDRIRRARENNEDV-AILSMFLPNATAERENKKFCCALRERCLLGDPRKLLQ-EPRR 280
G+++ RAR E + A+ FLP E ++ C L E C GD L Q +P R
Sbjct: 98 GRNKEGRARTEREILEAVDHPFLPRLFGVAEGDRWSCLLTEFCPGGDLHVLRQRQPHR 155
>06_02_0007 - 10533689-10534565,10535054-10535946
Length = 589
Score = 27.9 bits (59), Expect = 7.9
Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Frame = +2
Query: 122 RIRRARENNEDVAILSM-FLPNATAERENKKFCCALRERCLLGDPRKLLQEPR 277
++ RA+ E + L FLP E KF C + E C GD L Q R
Sbjct: 236 KLLRAQTEKEILQCLDHPFLPTLYTHFETDKFSCLVMEFCPGGDLHTLRQRQR 288
>04_04_0696 + 27328043-27329259,27329887-27330757
Length = 695
Score = 27.9 bits (59), Expect = 7.9
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 7/75 (9%)
Frame = +2
Query: 65 LSEDLKSRLHLTMKTV------GQDRIRRARENNEDVAILSM-FLPNATAERENKKFCCA 223
LSE +R + MK + + ++ RA+ E + +L FLP E +F C
Sbjct: 319 LSELSGTRCYFAMKVMDKASLASRKKLNRAQTEREILQLLDHPFLPTLYTHFETDRFSCL 378
Query: 224 LRERCLLGDPRKLLQ 268
+ E C GD L Q
Sbjct: 379 VMEFCPGGDLHTLRQ 393
>03_02_0490 -
8840577-8840914,8841009-8841067,8841168-8841283,
8841578-8841640,8841826-8842038,8842211-8842330,
8842453-8842578,8842593-8842749,8842830-8842962,
8843054-8843138,8843305-8843421
Length = 508
Score = 27.9 bits (59), Expect = 7.9
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +1
Query: 301 WHEKCFCCVVCKNPI 345
WH +CF C C++PI
Sbjct: 134 WHPQCFRCSSCRHPI 148
>02_05_0094 -
25758213-25758479,25758886-25758975,25759090-25759118,
25759208-25759307,25759411-25759545
Length = 206
Score = 27.9 bits (59), Expect = 7.9
Identities = 10/37 (27%), Positives = 18/37 (48%)
Frame = +1
Query: 301 WHEKCFCCVVCKNPIGTKSFIPREQEIYCAGCYEDKF 411
+H+ CF C CK + ++ + +YC +E F
Sbjct: 30 YHKTCFKCSHCKGTLSMCNYSSMDGVLYCKTHFEQLF 66
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,318,499
Number of Sequences: 37544
Number of extensions: 339348
Number of successful extensions: 1130
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1059
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1129
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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