Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060276.seq
         (685 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ438610-6|CAD27478.1|  226|Anopheles gambiae hypothetical prote...    25   2.9  
AF492464-1|AAM11657.1|  803|Anopheles gambiae beta nu integrin s...    24   5.1  

>AJ438610-6|CAD27478.1|  226|Anopheles gambiae hypothetical protein
           protein.
          Length = 226

 Score = 24.6 bits (51), Expect = 2.9
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -2

Query: 507 FVHVKHSRCHGSFLYVTPPLCDYL 436
           F+  +H    GS +YV P  CD L
Sbjct: 29  FLLSRHKNLEGSAMYVPPLYCDSL 52


>AF492464-1|AAM11657.1|  803|Anopheles gambiae beta nu integrin
           subunit AgBnu protein.
          Length = 803

 Score = 23.8 bits (49), Expect = 5.1
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +1

Query: 394 CYEDKFATRCVKCNKIITQGRRYVQERTVAPRV 492
           CY       C +CN   +Q RR + E+ VAP V
Sbjct: 494 CYVGWIGKTC-ECNLQNSQNRRELFEQCVAPSV 525


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 656,667
Number of Sequences: 2352
Number of extensions: 13046
Number of successful extensions: 22
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 68995575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)