Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060276.seq
         (685 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    23   2.1  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   2.1  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   2.7  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    23   2.7  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    23   3.6  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   4.7  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    22   4.7  

>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = +1

Query: 271 TKKMEYKTRQWHEKCFCCVV 330
           TK   +   QWH K F  V+
Sbjct: 66  TKNYPFDVDQWHNKTFLAVI 85


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 13/46 (28%), Positives = 19/46 (41%)
 Frame = +1

Query: 454 RRYVQERTVAPRVLHVHERNTSLAGQRFTFARREALTAAECFGGTV 591
           R   Q     PRV+ + +RN     +RF    + A T     GG +
Sbjct: 422 RELTQVTEEKPRVMKMGKRNIKAQVKRFRMETKAAKTLGIIVGGFI 467


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -1

Query: 685 QVFWSSKRRLKAGCP 641
           +V +SS+  +KAGCP
Sbjct: 117 RVLYSSRLTIKAGCP 131


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +1

Query: 493 LHVHERNTSLAGQRFTFARREALTAAECFGGTVSLXAALLAP 618
           LHV + NTS   ++       A+ A+   GG VSL    + P
Sbjct: 158 LHVFDLNTSHQLKQVVMPHDIAVNASTGNGGLVSLVVQAMDP 199


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/25 (36%), Positives = 11/25 (44%)
 Frame = +1

Query: 271 TKKMEYKTRQWHEKCFCCVVCKNPI 345
           TK       QWH K F  V+  N +
Sbjct: 67  TKNYPLDVDQWHNKTFLAVIRYNGV 91


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +2

Query: 509 ATRRSPASGSLSRDEKPL 562
           ++RRS  +G+   DEKPL
Sbjct: 249 SSRRSDMNGTTPLDEKPL 266


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 3/26 (11%)
 Frame = +1

Query: 418 RCVKCNKI---ITQGRRYVQERTVAP 486
           RC  CNKI   +T+ RR++Q     P
Sbjct: 4   RCEPCNKILTSLTRLRRHIQNVHTRP 29


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,597
Number of Sequences: 438
Number of extensions: 3559
Number of successful extensions: 19
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)